PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00004284-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 380aa MW: 43475.2 Da PI: 7.716 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.8 | 4.2e-53 | 12 | 141 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +ppGfrFhPt+eel+++yLkkkv+ +k++l +vi++vd++k+ePwdL++ k+ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk PSME_00004284-RA 12 VPPGFRFHPTEEELLHYYLKKKVSYEKIDL-DVIRDVDLNKLEPWDLHErcKIGSaPQNEWYFFSHKDKKYPTGSRTNRATAAGFWKATGRDK 103 69****************************.9***************862333333556********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ + + + +g++ktLvfykgrap+g+ktdW+mheyrle PSME_00004284-RA 104 AIRN-SYKRIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 141 ***9.8899****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-59 | 8 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.82 | 12 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-27 | 13 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MTSLSVNGSS SVPPGFRFHP TEEELLHYYL KKKVSYEKID LDVIRDVDLN KLEPWDLHER 60 CKIGSAPQNE WYFFSHKDKK YPTGSRTNRA TAAGFWKATG RDKAIRNSYK RIGMRKTLVF 120 YKGRAPHGQK TDWIMHEYRL EDNDNSFHGH EDGWVVCRVF KKKNYLKGHD DNSDPGSSNL 180 DQENSAVLSE PRDGPGHGEV QYSQIQHHHH QQQQQQLKHE LAAAGMQYSI LESHHHHDQL 240 MQMARHLENQ KLMNAAACKP PSPVSSGIKR LFPERGIEDG SKRIHYNHEI PTGNGNGTGS 300 GSSHVEFVSS STQEQSRHLN NQGQVQLNDW SSLDRLVASH LNQVEESSKE IRYVDHAMPS 360 GDHIALPLRS EIHDLWNFGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-50 | 11 | 164 | 14 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00431 | DAP | Transfer from AT4G10350 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT101915 | 0.0 | BT101915.1 Picea glauca clone GQ0133_D18 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023885588.1 | 1e-113 | protein BEARSKIN2 | ||||
Swissprot | Q9SV87 | 1e-99 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A345GNY9 | 1e-133 | A0A345GNY9_CUNLA; NAC transcription factor 1 protein | ||||
STRING | ERM99762 | 1e-111 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 1e-100 | NAC domain containing protein 70 |
Publications ? help Back to Top | |||
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