PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00003833-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | GATA | ||||||||
Protein Properties | Length: 354aa MW: 39154.1 Da PI: 8.2516 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58 | 1.3e-18 | 254 | 288 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg kTp+WR gp g+ktLCnaCG++y++ +l PSME_00003833-RA 254 CSHCGIQKTPQWRAGPKGPKTLCNACGVRYKSGRL 288 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 4.8E-72 | 1 | 339 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.701 | 248 | 284 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.3E-17 | 248 | 298 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 4.2E-15 | 252 | 286 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.95E-14 | 252 | 311 | No hit | No description |
CDD | cd00202 | 1.91E-15 | 253 | 304 | No hit | No description |
Pfam | PF00320 | 2.1E-16 | 254 | 288 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 254 | 279 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MDRVKLEAVT KLETCLTGDF FDHIEDLLDF SNEEIGAPIG ESSINCPNNA ILGGGSMAEG 60 VSSNFRVDDN YSGNLCVPCD DLADLEWLPS FPEDCLLETG PKSLYTPEFG VGLKDKYEEE 120 KNSDKFRSSS PTSVLVQNSD KSRSLVQNSD KSRSPSPTSV LERNSRKFSF FSPEITVPGK 180 ARSKRTRAPV CNWASRIISP ASSDGLLEHS PISFSNDSGY FFTELVESEP LKKIIKVNQG 240 GKKKGHDTVQ VRKCSHCGIQ KTPQWRAGPK GPKTLCNACG VRYKSGRLLP EYRPAASPTF 300 SAVKHSNSHR KVLEMRRQRE LMMQQQASQA KRAYLGSGDD GLVNISKDYR LSDL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 6e-47 | GATA transcription factor 9 |