PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00003833-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GATA
Protein Properties Length: 354aa    MW: 39154.1 Da    PI: 8.2516
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00003833-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA581.3e-18254288135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       Cs+Cg  kTp+WR gp g+ktLCnaCG++y++ +l
  PSME_00003833-RA 254 CSHCGIQKTPQWRAGPKGPKTLCNACGVRYKSGRL 288
                       *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.8E-721339IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.701248284IPR000679Zinc finger, GATA-type
SMARTSM004013.3E-17248298IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.2E-15252286IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.95E-14252311No hitNo description
CDDcd002021.91E-15253304No hitNo description
PfamPF003202.1E-16254288IPR000679Zinc finger, GATA-type
PROSITE patternPS003440254279IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDRVKLEAVT KLETCLTGDF FDHIEDLLDF SNEEIGAPIG ESSINCPNNA ILGGGSMAEG  60
VSSNFRVDDN YSGNLCVPCD DLADLEWLPS FPEDCLLETG PKSLYTPEFG VGLKDKYEEE  120
KNSDKFRSSS PTSVLVQNSD KSRSLVQNSD KSRSPSPTSV LERNSRKFSF FSPEITVPGK  180
ARSKRTRAPV CNWASRIISP ASSDGLLEHS PISFSNDSGY FFTELVESEP LKKIIKVNQG  240
GKKKGHDTVQ VRKCSHCGIQ KTPQWRAGPK GPKTLCNACG VRYKSGRLLP EYRPAASPTF  300
SAVKHSNSHR KVLEMRRQRE LMMQQQASQA KRAYLGSGDD GLVNISKDYR LSDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.16e-47GATA transcription factor 9