PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00003700-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 214aa MW: 23752.2 Da PI: 6.5913 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113.3 | 1.6e-35 | 49 | 149 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+ ++kC+++Cvlapyfp ++p+kf +h++FG + +kll+++p e+r +a+ss+vyeA r+rdPv+G++gvi +l+++++ l+ + PSME_00003700-RA 49 SCGACKISKKKCSENCVLAPYFPLDDPQKFLSIHRVFGKGHAIKLLRDIPAEQRGEAVSSMVYEASQRLRDPVHGCLGVIDDLHKKVAGLQLQ 141 6******************************************************************************************** PP DUF260 94 lallkeel 101 l++++++l PSME_00003700-RA 142 LDSTQAQL 149 *9999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.669 | 48 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-34 | 49 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MTGCRWSLSD LFSMIVKDGL THLSFSFVAT YHMMRNTAVQ QGETPSTVSC GACKISKKKC 60 SENCVLAPYF PLDDPQKFLS IHRVFGKGHA IKLLRDIPAE QRGEAVSSMV YEASQRLRDP 120 VHGCLGVIDD LHKKVAGLQL QLDSTQAQLA NISLQHANLL TLVTNSREAL VTNSHEALVP 180 QFYDASLQYS ENAPSNIPHV FDDIVDPLQL WEIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-32 | 50 | 149 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-32 | 50 | 149 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9LQR0 | 9e-41 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | B8LQI9 | 4e-64 | B8LQI9_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-43 | LOB domain-containing protein 1 |