PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00003602-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 231aa MW: 26001.5 Da PI: 8.2906 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.4 | 1.3e-31 | 10 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...sgy 82 lp+G++F+Ptd+el+ +L +k + + ++++ ++e +i++++P +Lp vk++ ++++ F++++k+y+tg rk r+++ + + PSME_00003602-RA 10 LPAGVKFDPTDQELL-GHLSAKFGTGNaqphpfIDEFIStLEEEnGICYTHPGNLP-GVKQDGSSVHVFHRTAKAYTTGPRKCRKIQsreNVR 100 799************.789999887776776663333333666558**********.7788899********************765455889 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tg +++v++ +ge++g+kk++v+y + + +k+ekt+Wvmh+y+l PSME_00003602-RA 101 WHKTGVTRPVYE-NGEQKGCKKIMVLYmtSVKGSKPEKTKWVMHQYHL 147 ************.999***********7645777777*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.98E-35 | 3 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.679 | 10 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-13 | 11 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MRVTQEWPGL PAGVKFDPTD QELLGHLSAK FGTGNAQPHP FIDEFISTLE EENGICYTHP 60 GNLPGVKQDG SSVHVFHRTA KAYTTGPRKC RKIQSRENVR WHKTGVTRPV YENGEQKGCK 120 KIMVLYMTSV KGSKPEKTKW VMHQYHLGTD EDEKEGEFVV SKIFYQQEKP CPKNDPDIPL 180 EDVGPSIGKG GPVTPKTSTP PLRSWNQHAC LEAVKEEHVY CPLSPQVCRK H |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003535503.1 | 3e-89 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-70 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q9M0F8 | 2e-70 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | B8LLI0 | 4e-90 | B8LLI0_PICSI; Uncharacterized protein | ||||
STRING | ERM95816 | 1e-88 | (Amborella trichopoda) | ||||
STRING | GLYMA10G34730.2 | 3e-88 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 5e-73 | NAC family protein |