PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00003339-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LSD | ||||||||
Protein Properties | Length: 221aa MW: 23226.8 Da PI: 8.2375 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.7 | 3.8e-13 | 75 | 99 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrtlL YP GAp+V+Ca+C+tV PSME_00003339-RA 75 CSGCRTLLVYPQGAPNVCCAVCNTV 99 ************************9 PP | |||||||
2 | zf-LSD1 | 37.4 | 4.2e-12 | 113 | 137 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg CrtlL+Y rGA+sV+C++C tV PSME_00003339-RA 113 CGRCRTLLMYARGATSVQCSCCSTV 137 ***********************99 PP | |||||||
3 | zf-LSD1 | 47.1 | 4e-15 | 151 | 175 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C t+L+YP+GApsV+CalC++V PSME_00003339-RA 151 CGNCFTTLMYPYGAPSVKCALCHFV 175 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.7E-13 | 72 | 102 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.4E-12 | 75 | 99 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.5E-13 | 110 | 139 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.4E-11 | 113 | 137 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.4E-11 | 148 | 178 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.4E-14 | 151 | 175 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MLSGGYSNRS DTTPVNNGSA NGPIGSAPAR INSIQNSNPG AVRPGWGTMP LHMNPYPPQP 60 MPLPPPNAVQ GQLVCSGCRT LLVYPQGAPN VCCAVCNTVT AVPPGAEMAQ LICGRCRTLL 120 MYARGATSVQ CSCCSTVNLA MEANQVAHVN CGNCFTTLMY PYGAPSVKCA LCHFVTNVGQ 180 ISNMRMPLPA QRPPAAATTA PASSSAVSFC FRFCFLYFED I |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT071760 | 0.0 | BT071760.1 Picea sitchensis clone WS0452_N14 unknown mRNA. | |||
GenBank | EF084706 | 0.0 | EF084706.1 Picea sitchensis clone WS02727_J11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008804686.1 | 4e-63 | protein LSD1-like | ||||
Refseq | XP_008804687.1 | 4e-63 | protein LSD1-like | ||||
Refseq | XP_011658526.1 | 2e-62 | PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2 | ||||
Swissprot | Q0J7V9 | 5e-57 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | A9NTQ6 | 1e-110 | A9NTQ6_PICSI; Uncharacterized protein | ||||
STRING | XP_008804686.1 | 2e-62 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 3e-45 | lsd one like 1 |
Publications ? help Back to Top | |||
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