PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00003323-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

G2-like

Protein Properties

Length: 372aa MW: 41770.9 Da PI: 8.9359

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00003323-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.8	5.7e-34	31	85	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl PSME_00003323-RA 31 KPRLRWTVELHDRFVDAVNQLGGPDKATPKTIMKVMGVKGLTLYHLKSHLQKFRL 85 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.888	28	88	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-32	28	86	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.55E-17	30	86	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.9E-24	31	86	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-8	33	83	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-26	128	175	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MYQQQQPNKK NNMSMQVSSG DAALVLTTDP KPRLRWTVEL HDRFVDAVNQ LGGPDKATPK 60 TIMKVMGVKG LTLYHLKSHL QKFRLGKQPH KELNDHKDGD RGSRLSEGHG ASTSASSRMM 120 GQEMNDGFHI SEALRMQMEV QRRLHEHLEV QKHLQLRIEA QGKYMQSILE KACQTLAGQT 180 VSSAGTESRR QELPDLASKV SNDFFRTPSR GAVNYPSLTE INAFRGEHSH MRQQTQLTDC 240 SVDSCLTSNE TFGKMIEENV QGVSMKRPLP FYCNSDTAVW EKDAKADDVR VHELSNELSN 300 TCLGQKENFK GEQRPSSSPV KSESERNSVS DVFETRGSQL QEPASSSKTE KELRSSPKLE 360 GPAPKKNPNS FR

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MYQQQQPNKK NNMSMQVSSG DAALVLTTDP KPRLRWTVEL HDRFVDAVNQ LGGPDKATPK  60
TIMKVMGVKG LTLYHLKSHL QKFRLGKQPH KELNDHKDGD RGSRLSEGHG ASTSASSRMM  120
GQEMNDGFHI SEALRMQMEV QRRLHEHLEV QKHLQLRIEA QGKYMQSILE KACQTLAGQT  180
VSSAGTESRR QELPDLASKV SNDFFRTPSR GAVNYPSLTE INAFRGEHSH MRQQTQLTDC  240
SVDSCLTSNE TFGKMIEENV QGVSMKRPLP FYCNSDTAVW EKDAKADDVR VHELSNELSN  300
TCLGQKENFK GEQRPSSSPV KSESERNSVS DVFETRGSQL QEPASSSKTE KELRSSPKLE  360
GPAPKKNPNS FR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-18	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-18	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-18	31	87	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	31	87	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	31	87	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	31	87	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-18	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-18	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-18	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-18	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-18	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-18	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ262399	1e-150	JQ262399.1 Pinus lambertiana isolate 3857 anonymous locus 2_507_01 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006840145.1	1e-103	protein PHR1-LIKE 3
Swissprot	Q94A57	1e-83	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	C0PPV3	1e-142	C0PPV3_PICSI; Uncharacterized protein
STRING	ERN01820	1e-102	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	5e-86	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]