PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00002844-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HB-other

Protein Properties

Length: 343aa MW: 38774 Da PI: 10.1283

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00002844-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	15.2	3.6e-05	67	123	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rr+R ++++ ++ L+ F+ + ++ ++e +e+++ +g t +qV+ +F +R + ++ PSME_00002844-RA 67 RRPRDLLNPKAVKCLQGIFAIKDTIMKREAREISALCGATITQVREFFSGQRSRVRR 123 899**************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.989	64	124	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-5	66	135	IPR009057	Homeodomain-like
SMART	SM00389	0.0052	66	128	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.01E-6	66	132	IPR009057	Homeodomain-like
CDD	cd00086	0.0012	67	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MLKDGTAEGS RVLRFPRAGA RKHGGVVAGP DGVAERAHAP PDRGVAEDRG LTMPAYWHKS 60 TLARNGRRPR DLLNPKAVKC LQGIFAIKDT IMKREAREIS ALCGATITQV REFFSGQRSR 120 VRRFVRQSMD KENNMQMSIT FEDSDQNSTK QSSCLTDMLH SESEVGNKVA AKDSYKLPND 180 DILGERESFD SNFIKSFFFL MRKESTFSGQ VQLLERILQI HDQAVLCRFV TKGGIPILAK 240 WLTLASVEEQ TTVLQVLFKV LFHLPLHKAL PVQMSTVLQT VNKLRFYRTS GISFLKHLLC 300 DLRFLCTKFD SFLSSSWGLL CTFIELLQLN KVVYLLSIFS CKS

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MLKDGTAEGS RVLRFPRAGA RKHGGVVAGP DGVAERAHAP PDRGVAEDRG LTMPAYWHKS  60
TLARNGRRPR DLLNPKAVKC LQGIFAIKDT IMKREAREIS ALCGATITQV REFFSGQRSR  120
VRRFVRQSMD KENNMQMSIT FEDSDQNSTK QSSCLTDMLH SESEVGNKVA AKDSYKLPND  180
DILGERESFD SNFIKSFFFL MRKESTFSGQ VQLLERILQI HDQAVLCRFV TKGGIPILAK  240
WLTLASVEEQ TTVLQVLFKV LFHLPLHKAL PVQMSTVLQT VNKLRFYRTS GISFLKHLLC  300
DLRFLCTKFD SFLSSSWGLL CTFIELLQLN KVVYLLSIFS CKS

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011627478.1	9e-70	homeobox protein LUMINIDEPENDENS isoform X1
Swissprot	Q38796	4e-61	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A1D6N269	8e-69	A0A1D6N269_MAIZE; Luminidependens protein1
TrEMBL	U5D6D6	2e-68	U5D6D6_AMBTC; Uncharacterized protein
STRING	ERN16982	3e-69	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-54	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]