PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00002824-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family B3
Protein Properties Length: 684aa    MW: 76604.4 Da    PI: 9.8138
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00002824-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.73.4e-161071752798
                       ---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       +++k +  ++tl  + +++Wev++   +  gr  l++GWk+F  +n+L+egD+++F+l+++++ +++v++fr
  PSME_00002824-RA 107 QLPK-GRYQVTLLGPGNKKWEVQY--IGDHGRAGLSGGWKHFSVDNNLEEGDICIFELMKKNKYTYKVHIFR 175
                       5554.5579***************..88888899*************************999********98 PP
2B344.92.1e-14393484498
                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       +++ps v +   l  pk+f  ++ ++++e +++tl  +++++W+v++  ++  g+  +++GW+ F  +n+++egD++vF+l+++ +  ++v++
  PSME_00002824-RA 393 IMKPSQVYQGFYLAWPKRFG-NCFQIPKERMQMTLLGPTNKEWQVQYLGDRVHGG--FSGGWRFFSLENNIEEGDVCVFELVNTVKYCFKVHI 482
                       578999999999999****9.5544556779****************55555555..89*********************9987666668888 PP

                       E- CS
                B3  97 fr 98 
                       fr
  PSME_00002824-RA 483 FR 484
                       87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.0E-984177IPR003340B3 DNA binding domain
SuperFamilySSF1019361.18E-1797175IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.33798177IPR003340B3 DNA binding domain
PfamPF023621.1E-1498175IPR003340B3 DNA binding domain
CDDcd100179.58E-1898175No hitNo description
Gene3DG3DSA:2.40.330.102.0E-1699175IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-17382484IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-18383484IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-7390486IPR003340B3 DNA binding domain
PROSITE profilePS5086311.476390486IPR003340B3 DNA binding domain
CDDcd100178.47E-19393484No hitNo description
PfamPF023622.6E-13393484IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MEDYNLLDYN EHQLMKRAPT LVTGHNLVFL APIKKGSRSP ILKCKILFAS LMPIFDCHQS  60
AAQPSLLINL CSSLRWPTLL VNICSSRLLQ HWQVIKALPK RLDNCFQLPK GRYQVTLLGP  120
GNKKWEVQYI GDHGRAGLSG GWKHFSVDNN LEEGDICIFE LMKKNKYTYK VHIFRVIKNC  180
TPYKKMEGAK VKDKIGRDRK SIALPSLSFG EKDNCSAQNK CPDTLINGSD VDKNQIVAKC  240
TNSKVLISLD SDEEFDDQAM ATPKFEQSVA GTSLNQAKCG CHGIDARTVN NTQSCQPSFA  300
GKKCKIVTSA DEEGKTCKIV TSPVNEGKKR KIVTSAGIEG KKCKTLTSPE NEGNSYLGLD  360
YVSCRRAVTQ AERKRALEAA NSFKSSKPFS LLIMKPSQVY QGFYLAWPKR FGNCFQIPKE  420
RMQMTLLGPT NKEWQVQYLG DRVHGGFSGG WRFFSLENNI EEGDVCVFEL VNTVKYCFKV  480
HIFRVVKKCT PFKKMEGTKV NDKDGQCKKM ITYPVNHSKK MKVSTTSTNK VATNLAVQAS  540
GRHIPDILEQ GIVVKKEEKE VQKKKDHSSS PNKLVEMVKC ICDSGKARRS SPRFNKVCNA  600
SEHHKKQLSF PAFANRKQTI DKDTKLLSSK TNILLDGVNG EADLIIIWDS NDVAGPSNII  660
PSQESIREQP LVAKSNVQAV KQEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A7e-2036548524142B3 domain-containing transcription factor VRN1
4i1k_B7e-2036548524142B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-21B3 family protein