PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00002749-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | ZF-HD | ||||||||
Protein Properties | Length: 250aa MW: 27733.7 Da PI: 8.6479 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 108.6 | 3.6e-34 | 53 | 109 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++vrY+eC+kNhAas+Ggha+DGCgEfmps g+egt +al+CaAC+CHRnFHRreve PSME_00002749-RA 53 KSVRYRECMKNHAASIGGHAIDGCGEFMPS-GDEGTLEALRCAACNCHRNFHRREVEG 109 679**************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-23 | 52 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 4.0E-31 | 55 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.1E-31 | 56 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 28.385 | 57 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.5E-19 | 178 | 248 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.2E-31 | 181 | 249 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.4E-26 | 187 | 243 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MELGGQEEEI GMPISVSYGP IHESSKLKIL TPGGNGAAAS DEQQQQQQAA AKKSVRYREC 60 MKNHAASIGG HAIDGCGEFM PSGDEGTLEA LRCAACNCHR NFHRREVEGE PPCYYCYNPR 120 KDSRKRPGGS PLPLALPSTS PSGVIARPSP QMIMAFGSGP THENDQQEHD MGFHGIHGAS 180 MAMPIMKKRF RTKFTQEQKD KMCSFADKLG WRIQKHDEAA VQQFCMELGV KRHVLKVWMH 240 NNKHTLGKKM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-26 | 188 | 245 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00258 | DAP | Transfer from AT2G02540 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT124341 | 0.0 | BT124341.1 Picea sitchensis clone WS0473_C24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024393207.1 | 6e-82 | zinc-finger homeodomain protein 2-like | ||||
Refseq | XP_024393215.1 | 6e-82 | zinc-finger homeodomain protein 2-like | ||||
Refseq | XP_024393224.1 | 6e-82 | zinc-finger homeodomain protein 2-like | ||||
Swissprot | A2Z259 | 1e-64 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
Swissprot | Q6YXH5 | 8e-65 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | D5ADH8 | 1e-173 | D5ADH8_PICSI; Uncharacterized protein | ||||
STRING | PP1S230_85V6.1 | 2e-81 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 1e-63 | homeobox protein 21 |
Publications ? help Back to Top | |||
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