PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00002740-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Trihelix
Protein Properties Length: 727aa    MW: 83271 Da    PI: 9.1566
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00002740-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.71e-25108191186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       rW+++e+laL+++r  + +++r+++ k+p We vs+k++e gf+rs+k+Ckek+en+nk+ykk+++g+++r++++s  +++ +++e
  PSME_00002740-RA 108 RWPREETLALLRIRAAICTNSRDSNVKGPVWETVSRKLAEMGFHRSAKKCKEKFENVNKYYKKTRDGRINRQDGKS--YRFCSEIE 191
                       8*********************************************************************966665..88887776 PP
2trihelix92.73.8e-29407491186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       rW++ ev aLi++r+em+ r++++ +k +lWe++s++m+  gf+rs+k+Ckekwen+nk+++k+k++++kr + +s+tcpyf ql+
  PSME_00002740-RA 407 RWPNPEVYALIKLRSEMDLRYKESIRKVALWEDISSAMACMGFHRSAKRCKEKWENINKYFRKTKRSMEKR-PLNSKTCPYFLQLD 491
                       8********************************************************************98.9***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.446101165IPR017877Myb-like domain
SMARTSM007170.077105167IPR001005SANT/Myb domain
CDDcd122033.42E-20107172No hitNo description
PfamPF138375.3E-18107192No hitNo description
PROSITE profilePS500907.248400464IPR017877Myb-like domain
SMARTSM007170.023404466IPR001005SANT/Myb domain
PfamPF138378.1E-20406492No hitNo description
CDDcd122032.72E-26406471No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MQSGIDYCGS LSDQIQQFMV GRQSVDTASH IFSTSNNSND FLGSQIKQQS GRLQPVQRLV  60
LQSPDSPENH NYLPNSLKQK AETVYERCPD EDIGAVGERG GKNSETNRWP REETLALLRI  120
RAAICTNSRD SNVKGPVWET VSRKLAEMGF HRSAKKCKEK FENVNKYYKK TRDGRINRQD  180
GKSYRFCSEI EALYVQASVK NGGIDKGANI GACTDANIGN QDNVKNYSSA LINNINQSQE  240
ETAIPRSTET IDNTSQNLSS DGTSIEEVLG KSKSDLKINR NRRKRKRSLS SVKDLLENMI  300
KRLMERQENS QKKFLEAIEK RDKDGLIREE AWKRQEMARL NRETELRAQE HALQSSREKA  360
IIEFLEKLES KNFKLDPRII PIQSAANDHQ QDENNTAGEK LELHSKRWPN PEVYALIKLR  420
SEMDLRYKES IRKVALWEDI SSAMACMGFH RSAKRCKEKW ENINKYFRKT KRSMEKRPLN  480
SKTCPYFLQL DTLYAKGVFL SPNHPKSDNK LENPSNSEAL IGIDGDNVDQ ERGQELKAND  540
QDPELLAIVA ASAHRSVQPA STSSETTDYL AQRMVKWNQN VIQTMDYQAV SLDSRPSSEY  600
LCTSNNDNDN NNKRFKMERL VQKGLGTQQN QYQKFLEGCR RREHEEQHHA DKELGHHQQQ  660
QNQQGEKYQA NLFPKPKEHQ QSQGKVSQAG LMDLVHKLST NFLHKLPAQN DPNPVQQLQV  720
VNDPNQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281286RRKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-82Trihelix family protein