PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00002554-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | bHLH | ||||||||
Protein Properties | Length: 334aa MW: 37412.3 Da PI: 6.0688 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.9 | 1e-09 | 145 | 188 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+++++ + +Lr+++P+ + K++K +i++ A+ Y+ +Lq PSME_00002554-RA 145 HTERKRRNKLKETLYKLRSVVPNiS------KMDKQSIVRDAISYMLDLQ 188 57*********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.28E-11 | 137 | 192 | No hit | No description |
PROSITE profile | PS50888 | 14.627 | 138 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-15 | 142 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-10 | 144 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-7 | 145 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-14 | 146 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
FVRGRIGEMD FIGFDSMKEL CKSEINQYSK GNVFGHGFPL EAMSNIVSAG LYENLSGQTS 60 TYSEPKTVES QTDQNTAISV CSEVFPMDHQ NSKLWMDMDE NSGQFDWDDN DSEIIGSNPA 120 ATQTYNSNGR VVQCQQRCQT SKNLHTERKR RNKLKETLYK LRSVVPNISK MDKQSIVRDA 180 ISYMLDLQKK VQEIEAEIQA LSSSNRSADY SQVITSETTK PLSNANCESL KSVDKKKSAN 240 NFIKQGKVLE VDICDVGEGG IYHVRIQMKK EDGVLVKLTR ALESLPLHII NSNICCLDEA 300 IFFTLTLDGS SVKIVGANKL KDMIRQTIES LNTC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LRN6 | 1e-90 | B8LRN6_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.2 | 2e-25 | bHLH family protein |