PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00002495-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 366aa    MW: 40906.2 Da    PI: 6.6003
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00002495-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.72e-31271324255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       pr+rWt++LH++Fv+av+ LGG+e+AtPk+++elm+vk Ltl+hvkSHLQ+YR+
  PSME_00002495-RA 271 PRMRWTSTLHAHFVHAVKLLGGHERATPKSVMELMNVKELTLTHVKSHLQMYRT 324
                       9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-15268325IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-28269325IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-23271324IPR006447Myb domain, plants
PfamPF002491.5E-6272323IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MQNIKNMYTR IESDMEASSI PDLSLHISPP NSKPAISPSN SFQNDGDRGL DSFNSRLSEE  60
YSSKSSDGSK KLSWQRVNDT QLELSLASFD FQAGSPAANG SYLDHEHYAI TINGFPLFQK  120
PSDEGQGHRS ISCAQGLTRL SGGQEDPRLI MSSLSGGETR EAIEDASSLG FIHSYSGHGY  180
PVSSVNKEDY VRCSNEFVRD KSNAIETPFF RPYEGISMNR DHPHSLSDSE DHFHGISTNN  240
SSCNPSAGTI PESHSCIKSR FMTKRRSMRA PRMRWTSTLH AHFVHAVKLL GGHERATPKS  300
VMELMNVKEL TLTHVKSHLQ MYRTVKSTDK SQCPSGHPES EALETFDAKF LEDFTENEIV  360
YCDRRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16272326458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16272326458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-16272326357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16272326357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16272326357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16272326357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16272326458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16272326458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16272326458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16272326458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16272326458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16272326458Protein PHOSPHATE STARVATION RESPONSE 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.22e-38G2-like family protein