PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00002086-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | Dof | ||||||||
Protein Properties | Length: 221aa MW: 24585.5 Da PI: 9.362 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 39.3 | 1.4e-12 | 102 | 130 | 34 | 62 |
zf-Dof 34 kaCrryWtkGGalrnvPvGggrrknkkss 62 ++CrryWtkGG lr v vGgg+r+nk+++ PSME_00002086-RA 102 QTCRRYWTKGGNLRTVLVGGGCRNNKRAK 130 79************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-7 | 102 | 128 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.4E-8 | 102 | 128 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MEYPQQSSLL DGMNLGVGDV VNLKIEEQGY QVDEELDAVV DFIAPIQPRR YVHIRWAWLK 60 AKGFYSGKML LEKGERRLSK GSKNNDDAQP FSNLHDSTDW PQTCRRYWTK GGNLRTVLVG 120 GGCRNNKRAK RTVAAEQPVF NTQNEPTTSA RPSANALPIS LDHHQNDLNP ATNSSSYFNL 180 SAHSTAGSTE ASLAFARIQE VARNGGRSKE FIKAAEKGML F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 4e-10 | OBF binding protein 4 |