PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00002086-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Dof
Protein Properties Length: 221aa    MW: 24585.5 Da    PI: 9.362
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00002086-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof39.31.4e-121021303462
            zf-Dof  34 kaCrryWtkGGalrnvPvGggrrknkkss 62 
                       ++CrryWtkGG lr v vGgg+r+nk+++
  PSME_00002086-RA 102 QTCRRYWTKGGNLRTVLVGGGCRNNKRAK 130
                       79************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-7102128IPR003851Zinc finger, Dof-type
PfamPF027012.4E-8102128IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEYPQQSSLL DGMNLGVGDV VNLKIEEQGY QVDEELDAVV DFIAPIQPRR YVHIRWAWLK  60
AKGFYSGKML LEKGERRLSK GSKNNDDAQP FSNLHDSTDW PQTCRRYWTK GGNLRTVLVG  120
GGCRNNKRAK RTVAAEQPVF NTQNEPTTSA RPSANALPIS LDHHQNDLNP ATNSSSYFNL  180
SAHSTAGSTE ASLAFARIQE VARNGGRSKE FIKAAEKGML F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.14e-10OBF binding protein 4