PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00002019-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 191aa MW: 20792.3 Da PI: 4.7579 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 84.1 | 2e-26 | 6 | 82 | 15 | 90 |
DUF260 15 dCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 dCv+apyf++++ +++fa++hk+FGasnv++ll +lp +r++a+ ++ yeA+ar++dPvyG v++i++lqqq + + PSME_00002019-RA 6 DCVFAPYFCSDEgAAHFAAIHKIFGASNVSNLLLHLPIPDRSEAVVTISYEAQARLQDPVYGGVAHIFALQQQAQLA 82 7*********9989**********************************************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 14.462 | 1 | 92 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.1E-24 | 6 | 83 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MDNILDCVFA PYFCSDEGAA HFAAIHKIFG ASNVSNLLLH LPIPDRSEAV VTISYEAQAR 60 LQDPVYGGVA HIFALQQQAQ LASRVSSGLA SISANHPVIS SSSYSQHLQF PAHLSLPCQP 120 IPQPYNALLS RVKEENSCGF TTYMDCDFSV SPSDSSSPLM EVLQRCRSLE ENEGEDNGEL 180 QALAHALLWR G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-18 | 7 | 78 | 26 | 96 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-18 | 7 | 78 | 26 | 96 | LOB family transfactor Ramosa2.1 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D5A9D3 | 1e-84 | D5A9D3_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 1e-37 | lateral organ boundaries-domain 29 |