PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001982-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GATA
Protein Properties Length: 378aa    MW: 41530.1 Da    PI: 6.2282
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001982-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.62e-19253287135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       Cs+C t kTp+WR gp+g+ktLCnaCG+++++ +l
  PSME_00001982-RA 253 CSHCATQKTPQWRAGPEGPKTLCNACGVRFKSGRL 287
                       *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.1E-18247297IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.7E-15251285IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.741251283IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-13251310No hitNo description
CDDcd002023.65E-14252299No hitNo description
PROSITE patternPS003440253278IPR000679Zinc finger, GATA-type
PfamPF003202.9E-17253287IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEGPNVQIDT SYGPSFLDGR KSRKMIEVEP GTIGGISDFL LIDDLLDFSN EEIAAPIGEK  60
CSDTNGVDSS TVTHTAKMAE TMLSCNNDSL LDNRISTHVS NAGSTDIKAH NSPVDLCVSC  120
DDLAELEWLS NFVEDSFSTG NVPTEITHHV LDSGKGSSSC ILEILRVPSR ARSKRSRAPV  180
CNWVSRILNS PSSSASIVYQ NGYTSSESYE QAGGAESLST NTNKLSKTKT THVTSKKRAA  240
VQVDHHGIQV RKCSHCATQK TPQWRAGPEG PKTLCNACGV RFKSGRLLPE YRPAASPTFV  300
GTQHSNSHRK VVEMRRQKLN DIDEKPHDHI EELVQGLIQY NYSSSEQHSD FVKSDDDECL  360
LHNNINTGED MNFCRQIV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1134990.0BT113499.1 Picea glauca clone GQ03411_C08 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267189.13e-63PREDICTED: GATA transcription factor 12-like
SwissprotP697812e-51GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A1U8AW426e-62A0A1U8AW42_NELNU; GATA transcription factor
STRINGXP_010267189.11e-62(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-42GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]