PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001973-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 360aa    MW: 40617.1 Da    PI: 9.4221
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001973-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.27.9e-29172229359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       Dg++WrKYGqK+ k+++ prsYYrC+ a +C+vkk+v+r+a+dp++v++tY+geH+h+
  PSME_00001973-RA 172 DGCQWRKYGQKMTKSNPLPRSYYRCAWApSCTVKKQVQRCAQDPTIVITTYKGEHTHS 229
                       9*************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-30160229IPR003657WRKY domain
SuperFamilySSF1182905.75E-26164230IPR003657WRKY domain
PROSITE profilePS5081125.293165231IPR003657WRKY domain
SMARTSM007742.2E-32170230IPR003657WRKY domain
PfamPF031061.7E-24172228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MQAVNMEEME GHSNKITMLV AEMNLISEEN RTLKSTLKRM SRKYNNLQKH IMSLVEQRKD  60
VDGNQIDRQG NDVLYARYSS SAVDPQYGQY WADFYERGWE LREKKSIAKF MDDQELYYSK  120
KRTMNYIETA QSENRINSSL NKKHHALNSV SAAVPKRIVS RRTSYEAAVR GDGCQWRKYG  180
QKMTKSNPLP RSYYRCAWAP SCTVKKQVQR CAQDPTIVIT TYKGEHTHSL SPLAMAAMHA  240
GSSNLLIGGF MNTDDLVAEK NFIPYISTIS TSTLFPATIT LDFTDNRPNS GLQLQPPHLT  300
AGSFHHSSPL RNNMGQAVDH LSIIQDYVAS IKTDPNFTSG LARAIAGSLL CLGAPVQEMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-19162230976Probable WRKY transcription factor 4
2lex_A1e-19162230976Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482CVK91e-125A0A482CVK9_9SPER; WRKY164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.14e-42WRKY family protein