PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00001749-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 83aa MW: 9387.97 Da PI: 9.923 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.2 | 2.6e-29 | 20 | 70 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i++ + rqvtfskR+ gi+KKA+ELSvLCdaevav+ifs+tg+lyey+s PSME_00001749-RA 20 KKIDDVTSRQVTFSKRKSGIFKKANELSVLCDAEVAVLIFSNTGRLYEYAS 70 689**********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 4.32E-29 | 12 | 73 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.917 | 12 | 72 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-39 | 12 | 71 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.06E-35 | 13 | 71 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 14 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-28 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.9E-26 | 21 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-28 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-28 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MKGIQTDRDV IMGRGKIEIK KIDDVTSRQV TFSKRKSGIF KKANELSVLC DAEVAVLIFS 60 NTGRLYEYAS SRYIQRPSLI CPC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 1e-19 | 12 | 71 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-19 | 12 | 71 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-19 | 12 | 71 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-19 | 12 | 71 | 1 | 60 | Myocyte-specific enhancer factor 2B |
5f28_A | 1e-19 | 12 | 71 | 1 | 60 | MEF2C |
5f28_B | 1e-19 | 12 | 71 | 1 | 60 | MEF2C |
5f28_C | 1e-19 | 12 | 71 | 1 | 60 | MEF2C |
5f28_D | 1e-19 | 12 | 71 | 1 | 60 | MEF2C |
6c9l_A | 1e-19 | 12 | 71 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-19 | 12 | 71 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-19 | 12 | 71 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-19 | 12 | 71 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-19 | 12 | 71 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-19 | 12 | 71 | 1 | 60 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT107302 | 1e-104 | BT107302.1 Picea glauca clone GQ03105_H22 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012086200.1 | 3e-29 | MADS-box transcription factor 23 isoform X2 | ||||
Refseq | XP_012086201.2 | 3e-29 | MADS-box transcription factor 23 isoform X1 | ||||
Swissprot | Q6VAM4 | 9e-29 | MAD23_ORYSJ; MADS-box transcription factor 23 | ||||
TrEMBL | A0A0K0M6Z4 | 2e-37 | A0A0K0M6Z4_PINTB; DAL21 (Fragment) | ||||
STRING | OS04T0461300-01 | 2e-28 | (Oryza sativa) | ||||
STRING | XP_010482531.1 | 9e-28 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51860.2 | 4e-30 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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