PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001676-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ARR-B
Protein Properties Length: 540aa    MW: 59716.9 Da    PI: 7.792
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001676-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like55.31.4e-17221263245
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                       +r++W+p+LH++Fv+av+q  G ++A Pk+ile+m+v+gLt+e+
  PSME_00001676-RA 221 ARVHWSPQLHQQFVKAVNQT-GLDNAAPKRILEMMNVQGLTREN 263
                       69*****************9.********************987 PP
2Response_reg60.68.1e-21571651109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+vdD+ ++++ll++ l++ +y +v++++ +++a+ l+ e++  +D+++ D+ +pg dG++ll+     +  lp+i+++ +ge + + + + 
  PSME_00001676-RA  57 VLVVDDDIIFLSLLEKKLRQCDY-KVTACTRASQAISLVMENKdgFDIVMSDVYLPGQDGFKLLEVVG-IGLGLPVIMMSENGETDIVMRSIT 147
                       89*********************.***************777779*******************9773.3567******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga dfl Kp+  eel++
  PSME_00001676-RA 148 GGACDFLIKPIRTEELRT 165
                       ***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23007.5E-3354191No hitNo description
SuperFamilySSF521722.85E-3054179IPR011006CheY-like superfamily
SMARTSM004482.4E-2355167IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011035.9956171IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-1857166IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.79E-2358170No hitNo description
SuperFamilySSF466898.06E-11217271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-17219271IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-13221263IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MADHHVAKAK GEAVSSRSSS SCSCSLCCCC HGGGSRKATA VAVAIDEEKF SPVGLHVLVV  60
DDDIIFLSLL EKKLRQCDYK VTACTRASQA ISLVMENKDG FDIVMSDVYL PGQDGFKLLE  120
VVGIGLGLPV IMMSENGETD IVMRSITGGA CDFLIKPIRT EELRTIWQHV VRRHRHQNHP  180
CNPKDNHGDL SDRSIVMAGE SNKRKHGGCE VIKDVNCLKT ARVHWSPQLH QQFVKAVNQT  240
GLDNAAPKRI LEMMNVQGLT RENKYRLYLK RLSGSFPEPR PVASFQAARD GKSGGTMQIR  300
QRGKTIPLSS SLSSSSSAIK ASPLRLELAG DLDHATLRSL EQFQAYEKKL VANEVQVLQG  360
FATAAAPPSY RSTNSHVDQG YESGPELHKM THVGWLRKNL QGGGGHRASS PLHDSATQSF  420
KLDFAELNET KPLPNLFGLS THQSQFQNPS PTTKTLEEND IHKVEAKRLI DDGQNIDEEE  480
LLFKNFVQEE FPDHVKVPPD QRPTLIAAAG DLSKKHFMLG DAFLPYPGHK EEITKQFHMF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380962.11e-90two-component response regulator ORR22-like
TrEMBLA0A0D6R6V81e-110A0A0D6R6V8_ARACU; Two-component response regulator
STRINGPP1S42_161V6.15e-90(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-60response regulator 2