PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001672-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 352aa    MW: 39062.1 Da    PI: 7.9227
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001672-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.47.1e-36261172102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+++++ed++++++isw+++g++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F+k++k+ll
  PSME_00001672-RA  26 FLIKTFQLVEDSSTDDIISWNKEGTTFIVWRPAEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDYFRKEEKHLL 109
                       9*****************************************************************99.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+ks
  PSME_00001672-RA 110 CEIHRRKS 117
                       ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-3717110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-5722115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-3323115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAHTAEQSNE TAVLAVEAHR SIPAPFLIKT FQLVEDSSTD DIISWNKEGT TFIVWRPAEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFRKIV PDRWEFANDY FRKEEKHLLC EIHRRKSVQH  120
SSAAPANRCV SPVNSGEEQA WSSTSSPVSS PKEAALANCG QNNISGLHGE NEKLKKDNLR  180
LISELAQMKK ECNDLLLFLS KCVNITPDNL RDILITASQT NCRDENLKAL PLDSSTLAKL  240
ASKSVFSENH EKKMPPNLLS DFCRSNDKDL DTAVKSTGGR EAKADCDDDG NKTPMLFGVP  300
LISGKKRPSP EAPASGSCVS KGPPLKGIKT DMPHEEAPWL KVCSSRGGKV YN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdk_A2e-21221177112Heat shock factor protein 2
5hdk_B2e-21221177112Heat shock factor protein 2
5hdk_C2e-21221177112Heat shock factor protein 2
5hdk_D2e-21221177112Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ2624215e-76JQ262421.1 Pinus radiata isolate 6736 anonymous locus 2_1014_02 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826240.12e-80heat shock factor protein HSF24
SwissprotP223351e-68HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A0D6R6B32e-94A0A0D6R6B3_ARACU; Uncharacterized protein
STRINGERM934776e-80(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.14e-67heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]