PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00001646-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 282aa MW: 31441.1 Da PI: 9.709

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00001646-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	98.1	1.3e-30	10	85	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfF++rd+ky++g+r+nra+ gyWka g+dk++ +k +++ vg+kk Lvfy g+apkg+kt+W+mheyrl PSME_00001646-RA 10 GEKEWYFFTSRDRKYPNGSRPNRAAGFGYWKAIGTDKPINAKgGKKRVGIKKALVFYAGKAPKGSKTNWIMHEYRL 85 689************************************966777*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.644	1	111	IPR003441	NAC domain
SuperFamily	SSF101941	1.31E-36	6	111	IPR003441	NAC domain
Pfam	PF02365	7.0E-14	13	85	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MKRLDKALFG EKEWYFFTSR DRKYPNGSRP NRAAGFGYWK AIGTDKPINA KGGKKRVGIK 60 KALVFYAGKA PKGSKTNWIM HEYRLADVSR TATKKGSLRL DDWVLCRIYN KNISAEKLAL 120 EQKEGPMDAP MEAVDEKDME NQPASTEVEH SGIEQNNPSS DNLRKLGPSP TSHNAVTPGS 180 YPMNANINLQ NDFFQNTTSP FNGSTLKAPV QNIAFNSIPS SINHQWTNYN STDLVSRLHT 240 DSSSSKPSSS SDPISEKEEV QSSFRVENFS QEQPQSVTTL LA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-53	5	117	64	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-53	5	117	64	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-53	5	117	64	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-53	5	117	64	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-53	5	117	67	174	NAC domain-containing protein 19
3swm_B	3e-53	5	117	67	174	NAC domain-containing protein 19
3swm_C	3e-53	5	117	67	174	NAC domain-containing protein 19
3swm_D	3e-53	5	117	67	174	NAC domain-containing protein 19
3swp_A	3e-53	5	117	67	174	NAC domain-containing protein 19
3swp_B	3e-53	5	117	67	174	NAC domain-containing protein 19
3swp_C	3e-53	5	117	67	174	NAC domain-containing protein 19
3swp_D	3e-53	5	117	67	174	NAC domain-containing protein 19
4dul_A	3e-53	5	117	64	171	NAC domain-containing protein 19
4dul_B	3e-53	5	117	64	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008792531.1	1e-60	NAC domain-containing protein 68-like isoform X2
TrEMBL	O65061	1e-119	O65061_PICMA; ATAF1-like protein (Fragment)
STRING	GSMUA_Achr4P02390_001	3e-62	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	9e-58	NAC domain containing protein 32