PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PSME_00001522-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 134aa MW: 15687.1 Da PI: 5.0941 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 19.9 | 1.6e-06 | 85 | 123 | 22 | 60 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 22 qRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 +RK +++e+Le + eL++eN+ L k + ++k+ev+ k PSME_00001522-RA 85 ERKNQRLENLEIRLRELQKENHGLMKDVAKMKQEVEDQK 123 6*********************99999999999999655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.5E-4 | 85 | 122 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 134 aa Download sequence Send to blast |
MAKLSSTGFF VLLSMMVIGT IIYLRLWTVE ADIDITDTRI DRLMFEQAQS EALDEAASWR 60 KKYDEEVENS SEHLQKLVEV TQTLERKNQR LENLEIRLRE LQKENHGLMK DVAKMKQEVE 120 DQKLKCARTG IKEV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF085302 | 1e-148 | EF085302.1 Picea sitchensis clone WS02724_M18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NVE8 | 1e-80 | A9NVE8_PICSI; Uncharacterized protein |