PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001521-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NF-YA
Protein Properties Length: 149aa    MW: 16309.7 Da    PI: 6.0952
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001521-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA52.31.8e-1699136139
         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpyl 39 
                       +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k+rk + 
  PSME_00001521-RA  99 EEPVYVNAKQYRGILRRRQSRAKAESENKL-IKNRKAIF 136
                       69****************************.99999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.1E-997146IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115216.86498149IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-11100134IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860103123IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MGSIDDSAPD EQQPQVDSVQ QEAPPPGMIP PPAMTLLPPE FVMPHTQLEL GQAMVRPAYP  60
YPDPYFGGIV AAYGPQAVIH PHMLGVPHAG VPLPSDAIEE PVYVNAKQYR GILRRRQSRA  120
KAESENKLIK NRKAIFYIRD GAISLDGSM
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1044181e-169BT104418.1 Picea glauca clone GQ02810_C14 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020268977.16e-47nuclear transcription factor Y subunit A-7 isoform X2
RefseqXP_024380415.17e-47nuclear transcription factor Y subunit A-7-like
RefseqXP_024380416.17e-47nuclear transcription factor Y subunit A-7-like
SwissprotQ84JP12e-25NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A2K1KAU82e-45A0A2K1KAU8_PHYPA; Uncharacterized protein
TrEMBLA9S2342e-43A9S234_PHYPA; Predicted protein
STRINGPP1S42_174V6.13e-46(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.25e-28nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]