PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001412-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 447aa    MW: 50286.3 Da    PI: 6.8541
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001412-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1622.3e-50271531128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       l+pGfrFhPt+eel+ +yL++kvegk++++ e i+++d+y+++Pw+Lp+ ++ ++kew+f++krd+ky++g+r+nr+t+sgyWkatg d+ v 
  PSME_00001412-RA  27 LMPGFRFHPTEEELLEFYLRRKVEGKHFNI-ELITSIDLYRYDPWELPAFASIGDKEWFFYVKRDRKYRNGDRPNRVTASGYWKATGADRMVR 118
                       689***************************.89***************877889*************************************** PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ ++ +glkktLvfykg+apkg++t+W+m+eyrl
  PSME_00001412-RA 119 NEVSRCIGLKKTLVFYKGKAPKGKRTSWIMNEYRL 153
                       *9999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-5420174IPR003441NAC domain
PROSITE profilePS5100555.69627174IPR003441NAC domain
PfamPF023651.5E-2429153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MAKSSCSLKD KDWIADESVF KHDQDVLMPG FRFHPTEEEL LEFYLRRKVE GKHFNIELIT  60
SIDLYRYDPW ELPAFASIGD KEWFFYVKRD RKYRNGDRPN RVTASGYWKA TGADRMVRNE  120
VSRCIGLKKT LVFYKGKAPK GKRTSWIMNE YRLPQIESQR IQKSELSLCR VYKRSGGPAE  180
GRQRAKEPRN RNENHELHQC QNYTACSNPR TAGESSNFEV NEGGKDEIMK HEEIPTSIKT  240
TAHSEIEEER FRAHTEYGAP DPMDYGVPDQ SENIPERIYS ESGNVWSTVS WPTALNEDIG  300
VSLTVPSLTT YFTYPRAPDQ PVMADDLYNN NSSNLILSNA LTGREDGAEL RSKAIPNIPL  360
NHIHNSPGPV GWSAGGEERR ERSSAPSGAK APPLTGGAIL KITSPVRGGT LAPERAELRS  420
LLSSPPVDGI SGMACWLDGI SGMVEWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-522417414165NO APICAL MERISTEM PROTEIN
1ut4_B2e-522417414165NO APICAL MERISTEM PROTEIN
1ut7_A2e-522417414165NO APICAL MERISTEM PROTEIN
1ut7_B2e-522417414165NO APICAL MERISTEM PROTEIN
4dul_A2e-522417414165NAC domain-containing protein 19
4dul_B2e-522417414165NAC domain-containing protein 19
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.15e-90NAC domain containing protein 35