PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001411-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 386aa    MW: 44296.2 Da    PI: 6.2533
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001411-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.46.8e-50341601128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       l+pGfrFhPt+eelv +yL++kvegk++++ e i+ vd+y+++Pw+Lp+ ++ +e+ew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ ++
  PSME_00001411-RA  34 LMPGFRFHPTEEELVEFYLRRKVEGKHFNI-ELITLVDLYRYDPWELPAFASLGENEWFFYVQRDRKYRSGDRPNRVTASGYWKATGADRMIH 125
                       689***************************.89***************8777899************************************** PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + ++ +glkktLvfykg+apkg++t+W+m+eyrl
  PSME_00001411-RA 126 GEVSRCIGLKKTLVFYKGKAPKGKRTSWIMNEYRL 160
                       *9999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5426181IPR003441NAC domain
PROSITE profilePS5100555.15634181IPR003441NAC domain
PfamPF023653.8E-2536160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MIFPALNLPT SSGGVKDKEW KAVESSFKHD QDVLMPGFRF HPTEEELVEF YLRRKVEGKH  60
FNIELITLVD LYRYDPWELP AFASLGENEW FFYVQRDRKY RSGDRPNRVT ASGYWKATGA  120
DRMIHGEVSR CIGLKKTLVF YKGKAPKGKR TSWIMNEYRL PQVETQKIQK NELSLCRVYK  180
RPGGSEEKRL RAAKIIQDEI ENETLSVNEN HDLSFSVAMQ DWASMHQCQT YMACSNPRTT  240
VESCNSEIKA CCKDEIVNLE ESPTDIKIMP KAATEDERFR AHMEYGVPDQ SGNIHERIYS  300
EGKNVWSTVS WPISLNEDLE LSLTTTCLMS CPTAPDQLAM TEDLYKNNPS YLVLANALTY  360
GACLPTCSDK LWEWNPVRHN GNGPSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-523118714171NO APICAL MERISTEM PROTEIN
1ut4_B4e-523118714171NO APICAL MERISTEM PROTEIN
1ut7_A4e-523118714171NO APICAL MERISTEM PROTEIN
1ut7_B4e-523118714171NO APICAL MERISTEM PROTEIN
4dul_A4e-523118714171NAC domain-containing protein 19
4dul_B4e-523118714171NAC domain-containing protein 19
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.17e-92NAC domain containing protein 35