PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001409-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 799aa    MW: 92440 Da    PI: 6.5941
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001409-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.63e-50291551128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       l+pGfrFhPt+eel+ +yL++kvegk++++ e i++vd+y+++Pw+Lp+ + ++ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ v 
  PSME_00001409-RA  29 LMPGFRFHPTEEELIEFYLRRKVEGKHFNI-ELITSVDLYRYDPWELPALACTGEKEWFFYVQRDRKYRNGDRPNRVTTSGYWKATGADRMVR 120
                       689***************************.89***************7777899************************************** PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ ++ +glkktLvfykg+apkg++t W+m+eyrl
  PSME_00001409-RA 121 NEVSRCIGLKKTLVFYKGKAPKGKRTGWIMNEYRL 155
                       *9999****************************98 PP
2NAM1609.1e-504796051128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       l+pGfrFhPt+eelv +yL++kvegk++++ e i++v++y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + 
  PSME_00001409-RA 479 LMPGFRFHPTEEELVEFYLRRKVEGKHFHI-ELIASVHLYQYDPWELPALATIGEKEWFFYVQRDRKYKNGDRPNRVTTSGYWKATGADRMIR 570
                       689***************************.89***************8778899************************************** PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ ++ +glkktLvfykg+apkg++t+W+m+eyrl
  PSME_00001409-RA 571 NEVSRCIGLKKTLVFYKGKAPKGKRTSWLMNEYRL 605
                       *9999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5521176IPR003441NAC domain
PROSITE profilePS5100555.6629176IPR003441NAC domain
PfamPF023651.7E-2431155IPR003441NAC domain
SuperFamilySSF1019415.23E-54469626IPR003441NAC domain
PROSITE profilePS5100554.831479626IPR003441NAC domain
PfamPF023653.6E-24481605IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MNLPRSSSSM KDKDWKTDES TFKHDQDVLM PGFRFHPTEE ELIEFYLRRK VEGKHFNIEL  60
ITSVDLYRYD PWELPALACT GEKEWFFYVQ RDRKYRNGDR PNRVTTSGYW KATGADRMVR  120
NEVSRCIGLK KTLVFYKGKA PKGKRTGWIM NEYRLPQLET QRSQKSELSL CRVYKKAGGS  180
EEGRQKAKER HNRTENHEMQ ECASKHQCQT YTACSNPRTT GESCNFEIKE NSTEEIVKLE  240
ESPTHIKIMP KSIIEVQRYP AHMEYGVPYQ SENIREHIYS DGGNVWGTVS RPIALNEDLG  300
PSLSTCLMCS RAPGQLAMAE NLYNNNPSNL VLTNALTYGA CLSTCSDKLW ETEWNPEWAG  360
MDQCQSCMSC SSPRMTAESC NFEIKAGSPV EIVKFEELAN DIETMPKSRN QLAMAEDLYN  420
HNSSYLFLTN ALTYGTCLQT CSDKLWEWNP MNLPTSSCNM KDKDWKTDES NFKHNQDFLM  480
PGFRFHPTEE ELVEFYLRRK VEGKHFHIEL IASVHLYQYD PWELPALATI GEKEWFFYVQ  540
RDRKYKNGDR PNRVTTSGYW KATGADRMIR NEVSRCIGLK KTLVFYKGKA PKGKRTSWLM  600
NEYRLPQLET YSIQKNELSL CRVYRRSGRS EEGLLESKER HNGTEIDRIT VNENHVESCS  660
VEMQESASMH QWQTYMACSN PRTTAESCDV KTMPELISGQ ERFPASVEYR ASDPSENTRE  720
RIYSQGENVW SIVSRPISLN EDLELSLATC LIFPRTPNQL GVTENLCIND DPSYLNVSNA  780
STNGACLQTY SDKLWDWNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-512663214171NO APICAL MERISTEM PROTEIN
1ut4_B2e-512663214171NO APICAL MERISTEM PROTEIN
1ut7_A2e-512663214171NO APICAL MERISTEM PROTEIN
1ut7_B2e-512663214171NO APICAL MERISTEM PROTEIN
3swm_A2e-512663217174NAC domain-containing protein 19
3swm_B2e-512663217174NAC domain-containing protein 19
3swm_C2e-512663217174NAC domain-containing protein 19
3swm_D2e-512663217174NAC domain-containing protein 19
3swp_A2e-512663217174NAC domain-containing protein 19
3swp_B2e-512663217174NAC domain-containing protein 19
3swp_C2e-512663217174NAC domain-containing protein 19
3swp_D2e-512663217174NAC domain-containing protein 19
4dul_A2e-512663214171NAC domain-containing protein 19
4dul_B2e-512663214171NAC domain-containing protein 19
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.19e-88NAC domain containing protein 35