PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001285-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 659aa    MW: 72597.4 Da    PI: 6.478
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001285-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.91.9e-27384437256
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        +++Wt +LH+rFv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  PSME_00001285-RA 384 LKVEWTMDLHRRFVQAVEQL-GVDQAIPSRILELMKVDGLTRHNVASHLQKYRSH 437
                       5899****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23008.7E-41267No hitNo description
SuperFamilySSF521728.82E-1212111IPR011006CheY-like superfamily
CDDcd001561.23E-517108No hitNo description
Gene3DG3DSA:3.40.50.23002.7E-670112No hitNo description
PROSITE profilePS5129416.12380439IPR017930Myb domain
SuperFamilySSF466898.6E-17381440IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-26381440IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-25383437IPR006447Myb domain, plants
PfamPF002491.4E-6385435IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MVSVAEWKDF PKGLRVLVLD EDTEAAAETK SRLEGFEYVV STFSNETEAL AVVANETNSF  60
HVALVEVSTV MSSRSCLSTT MKCIALGASE FLQKPISEDK LKNIWQHVVH KAFNECGTVL  120
SESLKPVKAT ILSMLHLGPE HANVKSAQKG DSSGGSKTEA SALHEVQSCT PIPTDSVKQD  180
TSIEPCNSEK FPAPSTPQLE QGGRSPSEED KTLRLDDATN FKAGTAHADN NCEYETIREL  240
RLGAEATSAW SSQVDSPASV KKEIQEMYRI SLKRRNSSQC GLKSVDITND QLGNEIASRV  300
TSLHSRLGTV DVQVVNAPGI AEEEVGSAEG SKSDDENIEK EAILSSYACN EENVDSSTED  360
IKGKKNNTEH DCKKSNIASS KKKLKVEWTM DLHRRFVQAV EQLGVDQAIP SRILELMKVD  420
GLTRHNVASH LQKYRSHRRH ILPREDEVAS RRYWQHFDPA WTRTKQDEAW SRKGNPAAVP  480
ILGYSPVQLH PTPHGTPVGQ PLHVWGHPTI DQSRSHTWQQ LPVGTPTTWQ AQDGSFWKHP  540
GVCVDAWGCP TLGVPFYPQP MTKLPANHVH RSTPNPNSTI QGVSVQHTPI SDPLNNNGSP  600
LWEKSLNGHP PKEVIDESFK EALNNPWTPL PLGLKPPSME SVMAELQRQG ISKIPPPAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-15379435157ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1078840.0BT107884.1 Picea glauca clone GQ03113_O04 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.62e-86ARR-B family protein