PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00001258-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | bZIP | ||||||||
Protein Properties | Length: 466aa MW: 48994.1 Da PI: 6.2588 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 76 | 4.8e-24 | 322 | 384 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++kv++L+ eN+aL++el+++ +e++kl++e+ PSME_00001258-RA 322 ERELKRQRRKQSNRESARRSRLRKQAECEELATKVDTLTVENMALRSELNRMAEECKKLTAEN 384 89**********************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 4.4E-33 | 1 | 98 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 6.2E-29 | 137 | 279 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 9.6E-20 | 315 | 381 | No hit | No description |
Pfam | PF00170 | 4.4E-21 | 322 | 384 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 7.6E-23 | 322 | 386 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.587 | 324 | 387 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.63E-11 | 325 | 381 | No hit | No description |
CDD | cd14702 | 6.70E-25 | 327 | 377 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 329 | 344 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MGTGEEGTPT KPPAKPSSSS QETPTTPVYP DWAAAFQAYY GPGATPPPPA FFASTVGSAP 60 TPHPYMWGGQ PLMPPYGTPL PYPAMYPHGG IYAHPSMPPG ALPYGHYGMP SPGNAEVTTT 120 LALPNAEAEG KSSEGKERNT MKRSKGSLGS LGMITGKGGE GGKATSGSAN EAMSQSGDSG 180 SDGSSEGSEE DNAQNDSQVA RKRSFDQMIV DGANAQSTNI SAYNTQAGEP YVTSSGHAMG 240 NPIGQAVAVP LGSVTGKPAA SGPITNLNIG MDYWNASAPG AITTVKGRGS AAGIPTAIVP 300 TTAQLMPPGR DGVPPELWIQ DERELKRQRR KQSNRESARR SRLRKQAECE ELATKVDTLT 360 VENMALRSEL NRMAEECKKL TAENTSIMER LKKSHGEDMT TTAEENGSTK ISLQSVKPEG 420 NGHFHDISRG INSSSTERSE QRQSEVCDSN GKVHTLLDAN ARSDTG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 338 | 344 | RRSRLRK |
2 | 338 | 345 | RRSRLRKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00291 | DAP | Transfer from AT2G35530 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT115206 | 0.0 | BT115206.1 Picea glauca clone GQ03611_H02 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010244323.1 | 1e-129 | PREDICTED: G-box-binding factor 1-like isoform X2 | ||||
TrEMBL | A0A0C9QT24 | 0.0 | A0A0C9QT24_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_10978_2763 transcribed RNA sequence | ||||
STRING | XP_010244321.1 | 1e-125 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 3e-77 | basic region/leucine zipper transcription factor 16 |