PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001246-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NF-YA
Protein Properties Length: 387aa    MW: 41844.6 Da    PI: 7.7638
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001246-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.35.1e-33206262158
         CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       +ep+YVNaKQy++Il+RRq Rak+e+e+kl +k+rkpylheSRh hA++R+Rg+gGrF
  PSME_00001246-RA 206 EEPVYVNAKQYHGILRRRQLRAKAESENKL-IKTRKPYLHESRHLHAMKRARGCGGRF 262
                       69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-38204265IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115239.13205265IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.7E-28207262IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.2E-23208230IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860210230IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.2E-23239262IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MTQELILTAL SVSEGYKLIM QGVECKEHRE SDGQPILSSA VPAMPWWNGY GSQFTQPAWC  60
TPVKSLFIDH PGRVPGAIKQ VASQSHQLEQ PSTQITVQSQ SQAEAVLAGT TRLQSMSNQS  120
GYSGANGEKQ SQHQSTKSVI ASGPTEYLVP HAQLEFNHSI ACGAYPYADP YFGGILAAYP  180
AQAMIHPNML GVQQARMPLP LDMTEEEPVY VNAKQYHGIL RRRQLRAKAE SENKLIKTRK  240
PYLHESRHLH AMKRARGCGG RFLNTKKSDD SKANMDNGKA SEGHLAQAGS SSGSEVLQSE  300
NGNGNSTQEV HGACGMSGSE VTSIAQSSEN GTTYQYSHAN GTYLNHYQHP HFHISAFHPL  360
SSGGEEGGNA KTGSILSGGS QRVVVIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-21206269265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7653860.0KF765386.1 Larix kaempferi NFYA1 (NFYA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388759.14e-79nuclear transcription factor Y subunit A-9-like isoform X2
TrEMBLA0A023R5Z30.0A0A023R5Z3_9SPER; NFYA1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-47nuclear factor Y, subunit A7