PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001023-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 455aa    MW: 50490.3 Da    PI: 6.5628
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001023-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.33.1e-32264319156
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                       k+r++W+peLH++Fv+a+++LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  PSME_00001023-RA 264 KARRCWSPELHRKFVNALQHLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 319
                       68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-29261322IPR009057Homeodomain-like
PROSITE profilePS5129414.062261321IPR017930Myb domain
SuperFamilySSF466891.31E-17261322IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-27264319IPR006447Myb domain, plants
PfamPF002493.6E-7266317IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MPSMGSVSDL TLQYRRPSGQ ISSSMLKASG SCPVGVEMDD QMQKIQEHLK ALEEERLKIE  60
AFKRELPFCM ELLNDAIEAS QEELATYESY PETTKCGRKE GENGLTSNLK PVLEEFIPVN  120
KTYTEESEEI EMKSNAKGDK IDWMSSAQLW SQNCDTKENT VRQPQKSLVP LNSKQRVGGA  180
FHPFSQEREE IAPSRCSAQR GLPDPGLSSG GPEEADHHGG LNSNNKIRCN DAGDQIEGCI  240
VPGNRNMSST NSHMLQQPGQ TQRKARRCWS PELHRKFVNA LQHLGGSQVA TPKQIRELMK  300
VDGLTNDEVK SHLQKYRLHT RRLPSSSCPQ SIGTVTQAPQ LVVLGGIWVP PEYATHHGHA  360
APDLYSTALP NMTAQSHAAR YYRQRPPPID AGNSLQEFCT SYSRNHMESS SQPQSAGSPQ  420
SSSSMSMEAD QDGNWKEKNN GDHSIMANFG RDPQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-14264317255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-14264317255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-14264317154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-14264317154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-14264317154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-14264317154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-14264317255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-14264317255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-14264317255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-14264317255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-14264317255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-14264317255Protein PHOSPHATE STARVATION RESPONSE 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A171NYB92e-90A0A171NYB9_TAXWC; GARP2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-74G2-like family protein