PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001021-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 458aa    MW: 50664.4 Da    PI: 6.8602
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001021-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.33.1e-32265320156
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                       k+r++W+peLH++Fv+a+++LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  PSME_00001021-RA 265 KARRCWSPELHRKFVNALQHLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 320
                       68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.062262322IPR017930Myb domain
SuperFamilySSF466891.61E-17262323IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-29262323IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-27265320IPR006447Myb domain, plants
PfamPF002493.6E-7267318IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MPSMGSASDL TLQYRRSSGQ ISSSMLKASG SCAAGVEMDD QMQKLQEHLK ALEEERLKIE  60
AFKRELPFCM ELLNDAIEAS QEELATYESY PETTKCGRKE GESGLTSNHK PVLEEFIPVK  120
KTYTEESEEI EMKSKAKGDK IDWMSSAQLW SQNCDTKENT VLRQPQKSLV PLNAKQRVGG  180
AFHPFSRERE EIAPSRCSAQ RGLPDLGLSS GGPEEADHHG GLNNNNKIRC NEAGDHIEGC  240
IVPGNRNTSS TDSHTPQQPG QTQRKARRCW SPELHRKFVN ALQHLGGSQV ATPKQIRELM  300
KVDGLTNDEV KSHLQKYRLH TRRLPSSSCP QSIGTVTQAP QLVVLGGIWV PPEYASHHGH  360
GAPDLYSTAL PNMTAQSHAA RYYRQRPPPP IDAGNSLQEF CTSYSRNIHM ESSSQPQSAG  420
SPQSSSSMSM EADQDGNWKE KDNGDHSIMA NFGRGPQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-14265318154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-14265318154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-14265318154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-14265318154Protein PHOSPHATE STARVATION RESPONSE 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A171NYB94e-93A0A171NYB9_TAXWC; GARP2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-76G2-like family protein