PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001008-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Dof
Protein Properties Length: 526aa    MW: 58272.6 Da    PI: 5.0002
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001008-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.37.2e-3886146262
            zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       ++k l+cprCds+ tkfCyynny+++qPr+fCk C+ryWt GG++rnvPvG+grrknk+s 
  PSME_00001008-RA  86 TDKLLRCPRCDSSGTKFCYYNNYNVNQPRHFCKDCQRYWTVGGTMRNVPVGAGRRKNKHSG 146
                       67889*****************************************************975 PP
2Myb_DNA-binding33.59.7e-11210251346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        WT eE +ll++a+ ++  + Wk +a+++g ++++ +c+sr+ +
  PSME_00001008-RA 210 DWTDEETLLLLEAIFLHNDD-WKCVAQHVG-TKSELDCVSRFVQ 251
                       6****************988.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2783143IPR003851Zinc finger, Dof-type
PfamPF027017.5E-3188144IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.05390144IPR003851Zinc finger, Dof-type
PROSITE patternPS01361092128IPR003851Zinc finger, Dof-type
SuperFamilySSF466898.22E-12206265IPR009057Homeodomain-like
PROSITE profilePS5129317.717206257IPR017884SANT domain
SMARTSM007171.1E-8207255IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-6207249IPR009057Homeodomain-like
PfamPF002491.2E-10210252IPR001005SANT/Myb domain
CDDcd001678.08E-8211252No hitNo description
PfamPF164951.5E-19435513IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MWCMASMNAQ EVVNPKSKDE GLSKEPGNSS GTNDCSVEGV KTIKQDPEKE LPITTMEEEP  60
KDEKGDETNK DEIEQNDNKD KMLRKTDKLL RCPRCDSSGT KFCYYNNYNV NQPRHFCKDC  120
QRYWTVGGTM RNVPVGAGRR KNKHSGTHYW HTMKSDGLTP ARAGAFDAAH HSGFVLCPKC  180
YESGNYGLGL SASDFKRVEF KEVSQHKSVD WTDEETLLLL EAIFLHNDDW KCVAQHVGTK  240
SELDCVSRFV QLPLGEQYVG NISNEGSDRS SGNVIGENTV IKQVSSPKDS STQEQYDHVS  300
NDDKHTTDDV SGPPLKRRHL TPLADASNPI MGQVAFLSAM VGSHVAEAAA HAAIAALSEE  360
DPASSLVTST REAECQNQKN GSGASGLVGF AKDVAMEDSK KETHGGTDQT TEDGESLAGE  420
KETTTPTVEM RAATATALES AAVRAKLLAD EEDRDVENLF STVVDTQMKK LQERIQRFEE  480
FDIITEKERS QLEHIKDLLF ADRMRFIQNT IKSRLSESKE KELEAA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1104420.0BT110442.1 Picea glauca clone GQ03221_O13 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47500.14e-38cycling DOF factor 3