PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00000455-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NF-YA | ||||||||
Protein Properties | Length: 139aa MW: 16047.5 Da PI: 10.9097 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 26.7 | 1.8e-08 | 40 | 72 | 5 | 38 |
CBFB_NFYA 5 YVNaKQyqrIlkRRqkRakleeekkldeksrkpy 38 +VNaKQ + IlkRR++R k ee++k + ++k + PSME_00000455-RA 40 WVNAKQSRCILKRRAARLKWEETRKK-QFQKKTI 72 7*********************8886.4444443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02045 | 2.4E-6 | 40 | 72 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
METHLTSHMK MGLDVPVPDE TNHLDQVKIA SLSRTGKWAW VNAKQSRCIL KRRAARLKWE 60 ETRKKQFQKK TILALRNKQS NKSFLQGCGS NRGKSNTDPP LYSSTSTPLT WSSALYVQEL 120 LNAKRRLEIL EVKEQERKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |