PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00000247-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Trihelix

Protein Properties

Length: 322aa MW: 36645.8 Da PI: 5.0427

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00000247-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.9	7.3e-15	51	135	1	81
trihelix 1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rWt e l+L++ + +e++l+ + +W+ +s+++++ ++r++ qC++kwe l +ykkike+e++ ++++s +++ PSME_00000247-RA 51 RWTLTEMLVLVREKWAVENELQLSPsksqfaGVSDKWSIISNHCAASHVQRTAGQCRKKWELLISDYKKIKEWERQ--CGVESYWSL 135 8*******************6432223336689**************************************8..899988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-9	51	157	No hit	No description
Gene3D	G3DSA:1.10.10.60	0.001	62	121	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.05	62	114	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MEGSHNYVSH FAQTQQEEGQ PASSIEELDI PLQEAARLSN SHGIRLQVAP RWTLTEMLVL 60 VREKWAVENE LQLSPSKSQF AGVSDKWSII SNHCAASHVQ RTAGQCRKKW ELLISDYKKI 120 KEWERQCGVE SYWSLSHIAK REHKLPFYLE RELFDAMDAN LDKTPTACPD ANFDSMDVAA 180 DSLFTANDDS QDDMVKMQDP TASGSGNEPL DSTIRHKRRR CSSEDDRDHD IISVLRENCQ 240 NIQDVIRETS QAQMCSSQLD RDTYWKGIEV NKQVQLQTSE LDRELRRKQG QDLIDVIGGL 300 VSAVNRLVDT IQNKSSQQLN GP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF086114	0.0	EF086114.1 Picea sitchensis clone WS0281_E13 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NXN9	0.0	A9NXN9_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	5e-26	Trihelix family protein