PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00000085-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NF-YC | ||||||||
Protein Properties | Length: 177aa MW: 19560.7 Da PI: 7.0952 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 36.6 | 9.6e-12 | 84 | 162 | 20 | 99 |
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++P ar++++++++ d++ s ea l+ ka e f+ ++ + s+ h e +++ l +a++v + + ++fl d vp++ PSME_00000085-RA 84 AFPTARVRRVIRSEGDIRT-SLEATFLINKAAERFLEQFVVDSFEHILEETKSNLSYKPLASTVGNQKRYEFLADFVPEK 162 69***************85.99*******************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 5.6E-6 | 85 | 137 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.4E-15 | 85 | 161 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.39E-11 | 100 | 162 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
VSVNFKFLPK MTATNSPKSD SSARSSSEFS EEQEKADEKP TPAKNPTDNG AHSSPNIADM 60 ENASAPTKHS HHKVPRPETP TTLAFPTARV RRVIRSEGDI RTSLEATFLI NKAAERFLEQ 120 FVVDSFEHIL EETKSNLSYK PLASTVGNQK RYEFLADFVP EKVKAADALA QRASAEN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT112011 | 1e-156 | BT112011.1 Picea glauca clone GQ03308_M04 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021831114.1 | 6e-27 | DNA polymerase epsilon subunit C | ||||
Refseq | XP_024157006.1 | 5e-27 | chromatin accessibility complex protein 1 | ||||
TrEMBL | D5ACA9 | 1e-74 | D5ACA9_PICSI; Uncharacterized protein | ||||
STRING | XP_008225482.1 | 1e-25 | (Prunus mume) | ||||
STRING | XP_008358413.1 | 1e-25 | (Malus domestica) | ||||
STRING | XP_007132235.1 | 4e-26 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 3e-20 | nuclear factor Y, subunit C10 |