PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf14789g00003.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

C2H2

Protein Properties

Length: 314aa MW: 35318.7 Da PI: 8.9936

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf14789g00003.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	40	62	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Peinf101Scf14789g00003.1 40 FICEICNKGFQRDQNLQLHRRGH 62 89*******************88 PP
2	zf-C2H2	12.7	0.00039	116	138	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Peinf101Scf14789g00003.1 116 WKCEKCSKKYAVQSDWKAHSKIC 138 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.4E-6	39	62	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.42E-7	39	62	No hit	No description
Pfam	PF12171	3.4E-5	40	62	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.845	40	62	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.022	40	62	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	42	62	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	81	111	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.5E-5	104	137	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.42E-7	111	136	No hit	No description
SMART	SM00355	140	116	136	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MISDDGLSSI SGFIQDPNPT NPDAEVIALS PKSLMATNRF ICEICNKGFQ RDQNLQLHRR 60 GHNLPWKLKQ RTNKEVKKKV YICPEKTCVH HDPSRALGDL TGIKKHFSRK HGEKKWKCEK 120 CSKKYAVQSD WKAHSKICGT REYKCDCGTL FSRKDSFITH RAFCDALAEE SARFTSVPTA 180 ANLNLRNQLL NGGISNHLQH SGNSQFGSLF RPELMGLGLD PSSQLNLDGQ KPRLPLWLDN 240 ANSGNYPNDF SSAPSSTTNS LPHELVQMTP QNSNNQWFMN GGGANSSSIP RVLKEEEENK 300 RNLSEIYFQS NQPE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-37	112	177	3	68	Zinc finger protein JACKDAW
5b3h_F	1e-37	112	177	3	68	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	1e-120	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009612448.1	0.0	PREDICTED: protein indeterminate-domain 9-like
Refseq	XP_016439111.1	0.0	PREDICTED: protein indeterminate-domain 9-like
Swissprot	Q944L3	1e-109	IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBL	A0A1S3XGQ3	0.0	A0A1S3XGQ3_TOBAC; protein indeterminate-domain 9-like
STRING	XP_009612448.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	8e-99	C2H2-like zinc finger protein

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]