PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf10375g00001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 280aa    MW: 31192.6 Da    PI: 6.9859
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf10375g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00190112123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               y+C+ C+++F++   L  H  +H
  Peinf101Scf10375g00001.1  90 YECKTCNRTFPSFQALGGHRTSH 112
                               99*********999998888777 PP
2zf-C2H212.80.00034171193123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C +Cg  F++   L  H+r+H
  Peinf101Scf10375g00001.1 171 HECAICGAEFTSGQALGGHMRRH 193
                               78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.16E-989112No hitNo description
PfamPF139122.9E-1389114IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.84590117IPR007087Zinc finger, C2H2
SMARTSM003550.05990112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SuperFamilySSF576678.16E-9166193No hitNo description
PfamPF139129.2E-12171195IPR007087Zinc finger, C2H2
PROSITE profilePS501579.515171193IPR007087Zinc finger, C2H2
SMARTSM003550.056171193IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280173193IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEFSEDSIDH TLVFKGKRSK RPRQLSPDIY SSSTTSTTQI SSSSSTEEDE DMANCLILLA  60
QSGQSHKQKF SSRKFTETAT STGKAGFYVY ECKTCNRTFP SFQALGGHRT SHRKSKTIAE  120
EKISTLEDHH QQQERVAQEE GEFIKIIPSI STQIINKGNM QSNFNSKSKI HECAICGAEF  180
TSGQALGGHM RRHRPPTITA NITNTKVSLS TTIDETSNYT SESSHDYDEI KEKPRIILSL  240
DLNLPAPPED GHHSDNTKFD FSGNKQCLVF SAAALVDCHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX607000.0X60700.1 P.hybrida EPF1 gene for DNA-binding protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016483854.11e-112PREDICTED: zinc finger protein ZAT5-like
TrEMBLQ436140.0Q43614_PETHY; DNA-binding protein
STRINGXP_009613500.11e-110(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.17e-54C2H2 family protein