PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf09753g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 320aa MW: 37304.1 Da PI: 7.3344 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.2 | 1.2e-14 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+++ +r++tf kR++g+ KK + LS+LCd+++++i++ + Peinf101Scf09753g00002.1 11 IQDHKKRKTTFLKRKAGLCKKVSQLSILCDIKACMILYQQ 50 8999********************************9865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.479 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-17 | 1 | 85 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-13 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 6.43E-19 | 2 | 88 | No hit | No description |
PRINTS | PR00404 | 3.0E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.3E-15 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 320 aa Download sequence Send to blast |
MGRAKIKLQL IQDHKKRKTT FLKRKAGLCK KVSQLSILCD IKACMILYQQ NIHGVVDQQD 60 IWPNDPKEVE ELINCYKKQP LEDRSKRTEN LSNFFENQKK KVKSEVAKLK KERTKYYPTW 120 DSRFDSLSEV ELRNIARVLE EKIENTKRKF EFLKSNNNND QEVWDYPELM NQTPCPTSYG 180 NNSISFVDNK WFQEFMTSGF QEFPSSGVNS LDNGNLFQEF TSGGVNSMDN GKLFQEFMRS 240 DQFQVIPSSG VNYMENGQHT VADYQFGINA ENWLVKNDIG AGEFYFGSSS MMQQPMELLK 300 LEYPNFTYNG STTQMPYYGF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009598741.1 | 5e-84 | PREDICTED: agamous-like MADS-box protein AGL82 | ||||
TrEMBL | A0A1S4B5Z1 | 2e-80 | A0A1S4B5Z1_TOBAC; agamous-like MADS-box protein AGL82 | ||||
STRING | XP_009598741.1 | 2e-83 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6342 | 12 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G55690.1 | 5e-17 | M-type_MADS family protein |