PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf09562g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 212aa MW: 23685.4 Da PI: 6.6804 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72.2 | 4.4e-23 | 15 | 63 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyey 49 +ien sn qvtfskRr+g++KKA+ELS+LC+aeva++ f+++g k+y + Peinf101Scf09562g00002.1 15 KIENASNLQVTFSKRREGLFKKASELSTLCGAEVAILAFAPNGnKVYSF 63 79***************************************98356655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-29 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.595 | 6 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.02E-26 | 7 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.98E-32 | 7 | 76 | No hit | No description |
PRINTS | PR00404 | 1.1E-16 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-23 | 15 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-16 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-16 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MPRKSAGRKK VKMAKIENAS NLQVTFSKRR EGLFKKASEL STLCGAEVAI LAFAPNGNKV 60 YSFGHPCANE IMDRYLARNP PNDETNNNNV NNELIEAFRN SSISDITNEL NQKEHELEME 120 RKRGEALQAV RKSKEACQHN WWETPIKKLN YDQVQQVKEA LEELHDIVES EAEHQMVNEN 180 AAFPFKNFGS ALSPGINFDS NGASGSGSTA SN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-15 | 7 | 116 | 2 | 94 | MEF2C |
5f28_B | 8e-15 | 7 | 116 | 2 | 94 | MEF2C |
5f28_C | 8e-15 | 7 | 116 | 2 | 94 | MEF2C |
5f28_D | 8e-15 | 7 | 116 | 2 | 94 | MEF2C |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019242819.1 | 8e-69 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1J6INK3 | 2e-67 | A0A1J6INK3_NICAT; Agamous-like mads-box protein agl62 | ||||
STRING | XP_009779105.1 | 8e-66 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA25213 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-45 | AGAMOUS-like 62 |