PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf08787g00002.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 672aa    MW: 76595.5 Da    PI: 9.8384
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf08787g00002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.52.4e-137891098
                              HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                        B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                              +++ ++l++p +f++ehg +     t++l  ++ + W+v+l  ++++++++l +GW+eF + + ++   f++Fk+ ++s+f  +v++
  Peinf101Scf08787g00002.1  7 MSAIALLRMPDRFVQEHGDE--LLDTVRLIVPTDEFWSVRL--KRSGKMIWLHDGWQEFMEHHSIDCWYFLLFKYGQSSCF--NVHI 87
                              56678899*********865..667****************..********************************999***..9999 PP

                              E- CS
                        B3 97 fr 98
                              f+
  Peinf101Scf08787g00002.1 88 FD 89
                              97 PP
2B354.81.7e-17171257291
                               EEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                        B3   2 fkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               +k+l  +++ +  + l ++ +f++e++   + s  + l+d +g++W++++   +++ r  l+kGW++Fv++  L +gD++vF+l+
  Peinf101Scf08787g00002.1 171 LKIL-AEYNIAGgQFLNISAEFVREYMP--KISNVIELQDCDGNKWTLRC--IRRKYRLCLSKGWSKFVRDTSLVAGDVCVFELI 250
                               5555.334444415679*********84..48889***************..6777779************************99 PP

                               SS.SEE. CS
                        B3  86 gr.sefe 91 
                                + ++ e
  Peinf101Scf08787g00002.1 251 TDiQTDE 257
                               8755443 PP
3B368.87.6e-22551643196
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               f ++l+  ++ ++ +l +p +f +e++ k  +sk ++l++++g++W+v++i rk      l+kGW++Fv++n L++gD++vF+l+
  Peinf101Scf08787g00002.1 551 FMQILVEYNAVRNYILNIPAEFSREYMPK--TSKFIKLQNSDGNKWNVRCIRRKD--LSSLSKGWRNFVRDNSLEVGDVCVFELI 631
                               667777888889999***********855..7789***************54444..456************************9 PP

                               SS.SEE..EEEE CS
                        B3  86 gr.sefelvvkv 96 
                               ++ ++ el++kv
  Peinf101Scf08787g00002.1 632 KDlQTDELMLKV 643
                               988887777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.35191IPR003340B3 DNA binding domain
SMARTSM010190.0013191IPR003340B3 DNA binding domain
PfamPF023627.9E-10589IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-151190IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-151290IPR015300DNA-binding pseudobarrel domain
CDDcd100173.18E-121389No hitNo description
Gene3DG3DSA:2.40.330.103.6E-25163263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.59E-24165255IPR015300DNA-binding pseudobarrel domain
CDDcd100179.68E-22168250No hitNo description
PROSITE profilePS5086313.394170266IPR003340B3 DNA binding domain
SMARTSM010191.4E-17170265IPR003340B3 DNA binding domain
PfamPF023626.4E-15170257IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-27544648IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-27546648IPR015300DNA-binding pseudobarrel domain
CDDcd100173.10E-27549647No hitNo description
PROSITE profilePS5086316.779551649IPR003340B3 DNA binding domain
SMARTSM010192.0E-20551649IPR003340B3 DNA binding domain
PfamPF023622.7E-19551643IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MFIFSGMSAI ALLRMPDRFV QEHGDELLDT VRLIVPTDEF WSVRLKRSGK MIWLHDGWQE  60
FMEHHSIDCW YFLLFKYGQS SCFNVHIFDL TAAEIHYRLR NHGNAKLQDI SQDLSLGKEK  120
VVDTSKSFTG QQMEKSVRRG RPPKRGRPLA AEADRAINAA KMFIPKNPYF LKILAEYNIA  180
GGQFLNISAE FVREYMPKIS NVIELQDCDG NKWTLRCIRR KYRLCLSKGW SKFVRDTSLV  240
AGDVCVFELI TDIQTDEHVL KFDESKDMES SDAFGSLSSN RTNCKTGESF TGQQMKKSVR  300
RGRPPKRGRP LAAEVNKAID AAKMCMPKDP YFMQIHYRLR SHGNARLHHI SQDLSYGKKI  360
GFDSDGESSV EIVDLLETAQ GPESSAKTSE LSHGPKKRKI APGRSKFLRC YETRSKANKL  420
HDKGQLLNAK NLNIVRDSSL TKPLMGKLVQ QNMNTSTYSE VVAGGVTNQE NAREGSKTDI  480
LQFNESKQTE SSDAFGPVSS NRTHCNDTGK SFTCQQLEKS VRPHKRGQPA VAEANRAKNA  540
AKMFIPKNPY FMQILVEYNA VRNYILNIPA EFSREYMPKT SKFIKLQNSD GNKWNVRCIR  600
RKDLSSLSKG WRNFVRDNSL EVGDVCVFEL IKDLQTDELM LKVHIFRARV EENSTTPVDT  660
LVAYLNQLSI SK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-2015064729141B3 domain-containing transcription factor VRN1
4i1k_B4e-2015064729141B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_009769342.11e-127(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85571529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-21B3 family protein