PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf08785g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C2H2 | ||||||||
Protein Properties | Length: 244aa MW: 27293.1 Da PI: 8.4851 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 63 | 85 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+k+ +++ L +H H Peinf101Scf08785g00003.1 63 YKCEICNKVLKSSQALGSHKTIH 85 9******************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.24E-8 | 61 | 85 | No hit | No description |
PROSITE profile | PS50157 | 9.556 | 63 | 90 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.5E-6 | 63 | 87 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.022 | 63 | 85 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 65 | 85 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.4E-4 | 110 | 127 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 61 | 111 | 142 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.24E-8 | 163 | 190 | No hit | No description |
Pfam | PF13912 | 2.2E-9 | 167 | 190 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.203 | 168 | 190 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 168 | 190 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 170 | 190 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSSFSDTSPE EDIAICLMML SKDVWRNIAI CLMMLSKDVW RSNNSSYTMA NVREKQGQQG 60 KCYKCEICNK VLKSSQALGS HKTIHKKTNF QEELQEKERK LRLKNVDDKV HECPFCGKMY 120 GSGQALGVLK SSQALGSHKT IHKKTNFQEE LQDKERKLRL KNVDDKVHEC PFCGKIYGSG 180 QALGGHKRSH ILSLSTTASS SSKVGDSLMD SSSANKFPNG FIDLNMPAPM EDEDFSQQEV 240 SAVS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-69 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009758380.1 | 1e-60 | PREDICTED: zinc finger protein ZAT9-like | ||||
Refseq | XP_016481923.1 | 1e-60 | PREDICTED: zinc finger protein ZAT9-like | ||||
TrEMBL | A0A1S4AZH7 | 2e-59 | A0A1S4AZH7_TOBAC; zinc finger protein ZAT9-like | ||||
TrEMBL | A0A1U7V984 | 2e-59 | A0A1U7V984_NICSY; zinc finger protein ZAT9-like | ||||
STRING | XP_009758380.1 | 4e-60 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1095 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-21 | C2H2-like zinc finger protein |