PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf08553g00003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 310aa    MW: 34729.4 Da    PI: 8.8874
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf08553g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017153175123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ykC++C+k+ +++  L +H   H
  Peinf101Scf08553g00003.1 153 YKCEICNKVLKSSQALGSHKTIH 175
                               9******************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.44E-5330No hitNo description
PfamPF139122.4E-8426IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.367431IPR007087Zinc finger, C2H2
SMARTSM003550.025426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576672.22E-9151223No hitNo description
PfamPF139128.9E-6153177IPR007087Zinc finger, C2H2
PROSITE profilePS501579.556153180IPR007087Zinc finger, C2H2
SMARTSM003550.022153175IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
PfamPF139122.4E-9200223IPR007087Zinc finger, C2H2
SMARTSM003550.13201223IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307201223IPR007087Zinc finger, C2H2
PROSITE patternPS000280203223IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEKHKCKLCS RKFSSGKAMG GHMRSHLMNL PLPPKTPPQK QDSGDPEFLD AGSSVVHDKE  60
SESESTKKPT RRRSKRIRRM FVVEETIKNH QHENKEEKSA EFEPVMSSFS DTSPEEDIAI  120
CLMMLSKDVW RTNNSSYTMS NVREKQGQQG KCYKCEICNK VLKSSQALGS HKTIHKKTNF  180
QEELQEKERK LRLKNVDDKV HECPFCGKMY GSGQALGGHK RSHILSLSTT ASSSSKVGDS  240
LMDSSSANKF PNGFIDLNMP APMEDEDFSQ QERGSCKAHC FETFTSNLKS VSRNKLLTEI  300
GLGALACLAG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078061.11e-108zinc finger protein ZAT4-like
TrEMBLM1AV171e-108M1AV17_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000309861e-108(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.17e-42C2H2-like zinc finger protein