PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf08521g00010.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 453aa    MW: 52957.2 Da    PI: 4.5125
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf08521g00010.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.54.2e-1228113183
                               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                               f k l   dv++s+ ++l k+ +e+    + + +sk+l ++d +g + +++++  ++ ++ y++++GWk++ ++++L+egD + +
  Peinf101Scf08521g00010.1  28 FTKFLCETDVGESCSVSLLKEDVENDlpHLAPGKSKMLEFQDIRGnNNFRMEFVRSNLGDYYYFSTGWKSYRNEHKLEEGDLLFL 112
                               8899999****************77799888999********8887899999976777777********************9988 PP

                               E CS
                        B3  83 k 83 
                               +
  Peinf101Scf08521g00010.1 113 Y 113
                               7 PP
2B335.41.9e-11163249186
                               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                               f k l  +dv++s  +++ k+ ae+h   + + +s++l ++d++g+ +++++ +r + g y++ +GW ++ ++++L+  D++  +
  Peinf101Scf08521g00010.1 163 FTKFLCEADVGESFSVSILKEDAEDHlpRLAPDKSMMLEFQDTRGNNFSMEF-VRSNLGDYYFCTGWGRYRDEHKLEYDDMLSVY 246
                               889999**********************88899*******************.68888999********************9988 PP

                               E-S CS
                        B3  84 ldg 86 
                               +++
  Peinf101Scf08521g00010.1 247 MKE 249
                               654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-1326122IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-1327114IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-928113IPR003340B3 DNA binding domain
CDDcd100178.22E-1128113No hitNo description
SMARTSM010193.1E-428134IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-14154251IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-13161249IPR015300DNA-binding pseudobarrel domain
CDDcd100178.82E-10163250No hitNo description
PfamPF023628.9E-9163248IPR003340B3 DNA binding domain
SMARTSM010190.1163267IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-4297393IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.66307410IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-5309393IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MNEEEEGESK DSQENTTSVE KEYVKVVFTK FLCETDVGES CSVSLLKEDV ENDLPHLAPG  60
KSKMLEFQDI RGNNNFRMEF VRSNLGDYYY FSTGWKSYRN EHKLEEGDLL FLYQKVKQNG  120
IDDDQRYFYL IECEKEAPEE RESKTQNPTQ ENTKKVENVK LVFTKFLCEA DVGESFSVSI  180
LKEDAEDHLP RLAPDKSMML EFQDTRGNNF SMEFVRSNLG DYYFCTGWGR YRDEHKLEYD  240
DMLSVYMKEK QNRVDDDQRY FYIIECQKVT PEHPTKFFLT HVEFVLAKLL AALEDSSKSS  300
VKKETVLAKL LCDRDLYGNS KGLKLQKNEV EENLNERPLA RVGGKITLPL FDPIGKKLFQ  360
MELVYTEEEE YYIGFGWKEY AAEHNLLTFD TIFVNKIIVN GDVVNHRSAN FIWDKDIDDD  420
QLVNNSYYYE IIYQRVSSPP SSSSAAGENY SYF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799396.11e-96PREDICTED: uncharacterized protein LOC104245480
TrEMBLA0A314L7506e-98A0A314L750_NICAT; Uncharacterized protein
STRINGXP_009799396.15e-96(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1631025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-09related to ABI3/VP1 2