PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf08153g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C2H2 | ||||||||
Protein Properties | Length: 252aa MW: 29269.3 Da PI: 7.7911 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.0001 | 14 | 37 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt..H 23 kC+ C + F+ k++L+ H++ H Peinf101Scf08153g00004.1 14 KCSACYRQFNKKEHLVEHMKIsyH 37 7******************97666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.406 | 13 | 42 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 15 | 37 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MDHRYESSET LRNKCSACYR QFNKKEHLVE HMKISYHSVH EPMCGICRKH CRSFESLREH 60 LIGPLPKAEC ERIFKDRGCD ICLTILASRN ALRAHRESCQ SRPNNGLHYR MANLGIQDEL 120 RIDNSRGRVV ALACKMVGGG SDGSLDLCAR SFFAMENLYG KSVLKEEGLG FLYDIQIGVQ 180 DPYEDCVATM KLYMRMKAQF HKKENYPLAT DPQNKNNFAS WRQNELERMS PEQLLDFSRS 240 DYYCWCLDTQ DN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215357 | 1e-69 | AC215357.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0016A12, complete sequence. | |||
GenBank | AC215415 | 1e-69 | AC215415.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0190P16, complete sequence. | |||
GenBank | AC215430 | 1e-69 | AC215430.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0236E02, complete sequence. | |||
GenBank | HG975441 | 1e-69 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975514 | 1e-69 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009758098.1 | 2e-96 | PREDICTED: RNA exonuclease 4 | ||||
Refseq | XP_016453226.1 | 1e-96 | PREDICTED: RNA exonuclease 4-like | ||||
Refseq | XP_019237478.1 | 2e-96 | PREDICTED: RNA exonuclease 4 | ||||
TrEMBL | A0A314ZAN1 | 1e-103 | A0A314ZAN1_PRUYE; RNA exonuclease 4 | ||||
STRING | XP_004142474.1 | 5e-97 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4327 | 2 | 3 |