PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf08098g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 184aa MW: 21529 Da PI: 4.2377 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.3 | 7.1e-08 | 6 | 33 | 1 | 28 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIa 28 +g+W++eEd++l+ ++k++G +W+ + Peinf101Scf08098g00007.1 6 KGPWSPEEDQKLKAYIKKYGIWNWSQMP 33 79******************98998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.428 | 1 | 44 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-12 | 3 | 38 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-8 | 4 | 36 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.41E-5 | 8 | 35 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-9 | 44 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.11 | 46 | 84 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 9.33E-7 | 49 | 80 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MDEIKKGPWS PEEDQKLKAY IKKYGIWNWS QMPKFAVPQL HQQTDMAEIK KGAWSPEEDQ 60 KLKDYIMRYD IWNWRQMPKF AERSADVASP CSSIVTCEEN QMMDVMDFSK TYQDCYNVSS 120 VVDQPAINVE NTAILESFPE TSENIDIANC QLHQFDYSHP CSSLIDGYNF NSLDQFDMNS 180 FWSD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019244663.1 | 6e-37 | PREDICTED: transcription factor WER-like | ||||
TrEMBL | A0A1J6JBL1 | 1e-35 | A0A1J6JBL1_NICAT; Myb-related protein myb4 | ||||
STRING | XP_009594710.1 | 1e-29 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 2e-09 | myb domain protein 93 |