PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf07732g00003.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

ARR-B

Protein Properties

Length: 410aa MW: 45449.5 Da PI: 6.1665

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf07732g00003.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	86.3	2.9e-27	305	358	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k +++WtpeLH++Fv+aveqL G+++A+P++ilelm+++gLt+++v+SHLQk+R+ Peinf101Scf07732g00003.1 305 KMKIDWTPELHKKFVKAVEQL-GIDQAIPSRILELMNIEGLTRHNVASHLQKFRM 358 5689***************.******************************8 PP
2	Response_reg	25.1	8.6e-10	18	101	25	109
EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHH CS Response_reg 25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107 v ++ d eal + k +++ ++ ++ ++dG lk +++++ +lp i+v++ + +++ +++ +Ga +fl Kp + ++l Peinf101Scf07732g00003.1 18 AVYTFCDENEALSAVSSKSevFHVAIVEVNADNSDG--GLKFLESAK-DLPTIMVSDIHSISTMMKCIALGAVEFLQKPLSDDKL 99 577899999****777777********776..344454554.89******************************999 PP HH CS Response_reg 108 vk 109 + Peinf101Scf07732g00003.1 100 SN 101 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50110	15.073	1	107	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	1.2E-5	18	101	IPR001789	Signal transduction response regulator, receiver domain
SuperFamily	SSF52172	1.22E-9	19	109	IPR011006	CheY-like superfamily
CDD	cd00156	1.53E-5	19	106	No hit	No description
Gene3D	G3DSA:3.40.50.2300	1.4E-10	19	124	No hit	No description
PROSITE profile	PS51294	12.019	302	361	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-26	303	362	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.82E-18	303	361	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-23	305	359	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-7	310	356	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MDYIVHLHTC DKIIHAPAVY TFCDENEALS AVSSKSEVFH VAIVEVNADN SDGGLKFLES 60 AKDLPTIMVS DIHSISTMMK CIALGAVEFL QKPLSDDKLS NIWQHVVHKA FNSGGKNVPE 120 SLKPVKESLL PMLELKQVKS EADNENMNGA ETFTSVVDNQ GSQPCCDKYP APSTPQLNQG 180 VRSVDDGDLQ DHTILSTEQD SGVHEGDTKS VDTACWNSVA ETTVLADFSG HISEGISKEE 240 HDSFADQKME DHNATCSQSX QKMEDRNATC SQSSDCPGNG STHSADSSKA SGLHSSSGTR 300 ANKKKMKIDW TPELHKKFVK AVEQLGIDQA IPSRILELMN IEGLTRHNVA SHLQKFRMQR 360 RQILPKEDER RWPRTQPRDS AQRSYYPHKP LMAFPTYHSN HAPNASQFYP

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MDYIVHLHTC DKIIHAPAVY TFCDENEALS AVSSKSEVFH VAIVEVNADN SDGGLKFLES  60
AKDLPTIMVS DIHSISTMMK CIALGAVEFL QKPLSDDKLS NIWQHVVHKA FNSGGKNVPE  120
SLKPVKESLL PMLELKQVKS EADNENMNGA ETFTSVVDNQ GSQPCCDKYP APSTPQLNQG  180
VRSVDDGDLQ DHTILSTEQD SGVHEGDTKS VDTACWNSVA ETTVLADFSG HISEGISKEE  240
HDSFADQKME DHNATCSQSX QKMEDRNATC SQSSDCPGNG STHSADSSKA SGLHSSSGTR  300
ANKKKMKIDW TPELHKKFVK AVEQLGIDQA IPSRILELMN IEGLTRHNVA SHLQKFRMQR  360
RQILPKEDER RWPRTQPRDS AQRSYYPHKP LMAFPTYHSN HAPNASQFYP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	9e-18	307	358	3	54	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009595585.1	0.0	PREDICTED: two-component response regulator-like APRR2
Refseq	XP_009595586.1	0.0	PREDICTED: two-component response regulator-like APRR2
Refseq	XP_009595587.1	0.0	PREDICTED: two-component response regulator-like APRR2
Refseq	XP_009595588.1	0.0	PREDICTED: two-component response regulator-like APRR2
Refseq	XP_009595589.1	0.0	PREDICTED: two-component response regulator-like APRR2
Refseq	XP_018624868.1	0.0	PREDICTED: two-component response regulator-like APRR2
Refseq	XP_018624869.1	0.0	PREDICTED: two-component response regulator-like APRR2
Swissprot	Q6LA43	4e-90	APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBL	A0A1S3X7R1	0.0	A0A1S3X7R1_TOBAC; two-component response regulator-like APRR2
STRING	XP_009595585.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5673	15	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.5	1e-89	ARR-B family protein

Publications ? help Back to Top
Gong L, et al. Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions. PLoS ONE, 2015. 10(5): p. e0128041 [PMID:26010543]