PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf07173g00023.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family E2F/DP
Protein Properties Length: 323aa    MW: 36450.4 Da    PI: 9.7016
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf07173g00023.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP55.31.1e-1725791271
                   E2F_TDP 12 kflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                              +flkl+ ++  + + l+++a++L    v  +rRRiYD++N+Le+++++++k+kn +rw+g
  Peinf101Scf07173g00023.1 25 SFLKLCDREGVDSIGLDNAADQL---GV--ERRRIYDVVNILESVGVLSRKAKNLYRWNG 79
                              59******999************...**..****************************98 PP
2E2F_TDP75.36.3e-24114194171
                   E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                               rkeksL ll+q+f+kl+++s+ + ++++++ ++L+ +      +k+k RR+YDi+NV+ ++nliek     + k+++rw+g
  Peinf101Scf07173g00023.1 114 RKEKSLMLLAQNFVKLFQCSDVDLISFDKAVSALLDDihdpsAMKTKTRRLYDITNVFASMNLIEKirspdNGKPAFRWIG 194
                               79********************************999*********************************99*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013726.5E-151679IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.41E-122177IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.6E-182581IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.5E-142679IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.4E-20112195IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.0E-26114194IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.4E-18115194IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.78E-12116195IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
QSLRQKQIYS SIIFFLDLIS FVLFSFLKLC DREGVDSIGL DNAADQLGVE RRRIYDVVNI  60
LESVGVLSRK AKNLYRWNGL SAIPQALDLL KKEGLRDQST DSSTCHNVAN VYNRKEKSLM  120
LLAQNFVKLF QCSDVDLISF DKAVSALLDD IHDPSAMKTK TRRLYDITNV FASMNLIEKI  180
RSPDNGKPAF RWIGWNGNPR TGSPTAPKSD DLKRRTFGTD ITNKIPKRCR DDSSSDLMSN  240
GQVKRLMVAK DDELKDKNQE MPTKQPNGHS TVDFVYGPFG PASLPRSGVP GKENSKQTQN  300
WEELASAYRP LYQNKGTTKI SFE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771456.11e-175PREDICTED: E2F transcription factor-like E2FE isoform X2
RefseqXP_016465902.11e-175PREDICTED: E2F transcription factor-like E2FF isoform X1
RefseqXP_016465903.11e-175PREDICTED: E2F transcription factor-like E2FE isoform X2
TrEMBLA0A1S3ZNG81e-174A0A1S3ZNG8_TOBAC; E2F transcription factor-like E2FF isoform X1
TrEMBLA0A1S3ZNR21e-174A0A1S3ZNR2_TOBAC; E2F transcription factor-like E2FE isoform X2
TrEMBLA0A1U7W2N01e-174A0A1U7W2N0_NICSY; E2F transcription factor-like E2FE isoform X2
STRINGXP_009771455.11e-174(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25222457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.17e-76DP-E2F-like 1