PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf06478g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 101aa MW: 11551 Da PI: 7.5122 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.1 | 1.3e-10 | 41 | 89 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v+++G g+W+ I r+ Rt ++k++w+++l Peinf101Scf06478g00003.1 41 PWTINEVVKLVEGVARYGAGRWSEIKRHAFascPYRTSVDLKDKWRNLL 89 8****************************99**9*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.395 | 34 | 93 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-16 | 35 | 91 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.1E-8 | 38 | 91 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.51E-17 | 40 | 94 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.71E-19 | 40 | 90 | No hit | No description |
Pfam | PF00249 | 2.8E-8 | 41 | 89 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MNIVEIENDT EVNDCSEDNS EDNVVTLPTP KGGMRRKHHR PWTINEVVKL VEGVARYGAG 60 RWSEIKRHAF ASCPYRTSVD LKDKWRNLLK ATFVQLPAEQ G |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to the plant telomeric double-stranded DNA sequences. At least 4 repeats of telomeric sequences are required for binding. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU124740 | 1e-92 | EU124740.1 Solanum lycopersicum chromosome 3 clone C03HBa0295I12, complete sequence. | |||
GenBank | HG975442 | 1e-92 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. | |||
GenBank | HG975515 | 1e-92 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006342945.1 | 3e-60 | PREDICTED: uncharacterized protein LOC102604816 isoform X1 | ||||
Refseq | XP_006342946.1 | 3e-60 | PREDICTED: uncharacterized protein LOC102604816 isoform X1 | ||||
Refseq | XP_015162223.1 | 2e-60 | PREDICTED: uncharacterized protein LOC102604816 isoform X2 | ||||
Swissprot | Q9M347 | 1e-12 | TRP6_ARATH; Telomere repeat-binding protein 6 | ||||
TrEMBL | M0ZR63 | 6e-59 | M0ZR63_SOLTU; Uncharacterized protein | ||||
TrEMBL | M0ZR64 | 3e-59 | M0ZR64_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400006342 | 1e-59 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11881 | 20 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 3e-35 | TRF-like 6 |