PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf06304g00013.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 579aa    MW: 64000.8 Da    PI: 5.5044
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf06304g00013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-09463511348
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                               +WT  E  +lv++v+++G g+W+ I r+       Rt  ++k++w+++l
  Peinf101Scf06304g00013.1 463 PWTINEVVKLVEGVARYGAGRWSEIKRHAFascPYRTSVDLKDKWRNLL 511
                               8****************************99**9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.395456515IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-14458513IPR009057Homeodomain-like
SMARTSM007179.1E-8460513IPR001005SANT/Myb domain
SuperFamilySSF466892.77E-16462517IPR009057Homeodomain-like
CDDcd116605.76E-19462512No hitNo description
PfamPF002495.9E-7463511IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
VDGDGRLVPA TQDEIMAVEG FLEDDKCEPK LVPDTRQTSE SFKTEGCLLE SNPFQAPEGK  60
IKYEDPEVGA EKSNVSGGPV PDLENIEVPT KVTVHELAPC TELSNIEVSV KTEVCSNSQD  120
ALVEDKPSTS AAGSSLKPDF SKLEGKICLD NLTVRELHET FKATFGRETS VKDKQWLKRR  180
ITMGLTNSCD FSCTTFIIRN NLVVKKGEEQ ICHRLKGSVS ASEVGMANSD SGGSLGDHES  240
RSNDDANFSG TDVPRSAIES CDVTKDLSTE QRPAKRLRKP TKRYIEELSE IESGESSEKL  300
ASSDKPSRYR SPCPETLMKP TENVKSNVRP LVTRQDSLGG SGVEIPFVSR IRRSRPRENF  360
MTLLKLQPCG MDMATRQVRS VFDVAEPEDE KINNDLIKTS SSPGWTPQPL DAACEKDEHY  420
SGMNIVEIEN DTEVNDCSED NSEDNVVTLP TPKGGMRRKH HRPWTINEVV KLVEGVARYG  480
AGRWSEIKRH AFASCPYRTS VDLKDKWRNL LKATFVQLPA EQGMLNSRKQ ASIPIPAPIL  540
SRVRELADMQ GQVPPIFSSG KSIGHSSSRS VHEARSGYL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016459221.10.0PREDICTED: uncharacterized protein LOC107782799 isoform X2
TrEMBLA0A1S3Z4470.0A0A1S3Z447_TOBAC; uncharacterized protein LOC107782799 isoform X2
STRINGXP_009602392.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118812023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-94TRF-like 6