PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf06241g00003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 495aa    MW: 54514 Da    PI: 9.0428
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf06241g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0591113123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C+k F r  nL+ H r H
  Peinf101Scf06241g00003.1  91 FVCEICNKGFQRDQNLQLHRRGH 113
                               89*******************88 PP
2zf-C2H213.40.00023167189123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC++C+k++  +s+ k H +t+
  Peinf101Scf06241g00003.1 167 WKCEKCSKRYAVQSDWKAHSKTC 189
                               58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-790113No hitNo description
Gene3DG3DSA:3.30.160.601.6E-590113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01791113IPR015880Zinc finger, C2H2-like
PfamPF121717.9E-591113IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94991113IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SMARTSM0035587132162IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.6E-5155188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.02E-7162187No hitNo description
SMARTSM00355130167187IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MMKSLVNQQS QVVEENMSNL TSASGEAASV SSCNRNDTSG GLYPPQYFAP PNQSTQPQQQ  60
IKKKRNQPGN PDPGAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK  120
QRTSKEIRKK VYVCPEPSCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS  180
DWKAHSKTCG TKEYRCDCGT LFSRRDSFIT HRAFCDALAE ESARAIPGNP IHPSQTGTST  240
SHMNIQFQQS HFNNHDIPAT FSMKKEPQTH GFNLRPEIPP WLITCQPMVT SGLSPGPGPG  300
PPPPQPQPID LSSSIFHSSR FDQDHYTPQS HHQDINPNPT LGGHGLMASP HISATALLQK  360
AAQMGATMSN KASSVSSGPS QAMLIMRPHH QVHVSTTTDS ATNTSPVTSA PPSSILQDMM  420
NSFSSTNTTG FEGSNFEDAF GGIGMLNSKK DNDDMTKDFL GLRPLSSNDI FNIAGLVNTS  480
NEQNHQSQNH KAWQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-35163224364Zinc finger protein JACKDAW
5b3h_F8e-35163224364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117129KLKQRTSKEIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136590.0BT013659.1 Lycopersicon esculentum clone 132478R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016479409.10.0PREDICTED: protein indeterminate-domain 7-like
RefseqXP_016479410.10.0PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F51e-133IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A1S4ARV00.0A0A1S4ARV0_TOBAC; protein indeterminate-domain 7-like
STRINGXP_009626387.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-135indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]