PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf06135g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 228aa MW: 25425.2 Da PI: 5.982 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.8 | 1.8e-11 | 14 | 44 | 1 | 31 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 rg WT+eEd +l +++q+G+++W++I+++ Peinf101Scf06135g00002.1 14 RGQWTPEEDHKLSSYIAQHGTRNWRLIPKHA 44 89***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-13 | 5 | 44 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.15E-8 | 8 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.422 | 9 | 55 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.3E-9 | 14 | 44 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.28E-5 | 17 | 43 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGRIPCCEKE NVKRGQWTPE EDHKLSSYIA QHGTRNWRLI PKHAEAALGC FKDEMLHLLT 60 KKRIGFQFQQ FGTSTAPSTS TVKVEDNKEE TIEKIKYGLS RAIKESDMLP SNKHWDPSGG 120 ARSTNLAEPS SGFPHVSDGG FQYNFASLLH EDGEEGSPWN QSLCTGSTCT VGEQQQVHQL 180 HKKLNSNDNC GEDNSDGVKE TRNGSTTMFH SDCILWDISS DDLLNPIV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009602016.1 | 6e-64 | PREDICTED: transcription factor MYB80 | ||||
TrEMBL | A0A1J6I268 | 9e-62 | A0A1J6I268_NICAT; Transcription factor myb80 | ||||
STRING | XP_009602016.1 | 2e-63 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 2e-24 | myb domain protein 103 |